Gene Smed_0124 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0124 
Symbol 
ID5320953 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp138486 
End bp139169 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content65% 
IMG OID640789057 
Producttwo component transcriptional regulator 
Protein accessionYP_001325819 
Protein GI150395352 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID[TIGR02154] phosphate regulon transcriptional regulatory protein PhoB 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.352403 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTGCCGA AGATTGCCGT AGTCGAAGAC GAGGAAGCCC TGAGCGTTCT CCTGCGCTAT 
AATCTCGAGG CGGAAGGCTT CGAGGTTGAC ACTATCCTTC GCGGCGACGA GGCGGAAATC
CGCCTGCAGG AGCGCCTGCC CGACCTTCTC ATTCTCGACT GGATGCTGCC CGGGGTTTCC
GGCATCGAGC TCTGCCGCAG GCTGCGCCAG CGGCCCGAGA CGGAGCGCCT TCCGATCATC
ATGCTGACGG CGCGCGGCGA GGAAAGCGAG CGCGTGCGGG GCCTTGCGAC CGGCGCCGAC
GACTATGTCG TCAAACCGTT CTCGACGCCG GAACTGATGG CGAGGGTCAA GGCGATGCTC
AGGCGAGCCA AGCCCGAGGT CCTGTCGACG CTCCTGCGCT GCGGCGATAT CGAGCTCGAC
CGGGAGACGC ACCGGGTGCA TCGCCGCAGC CGCGAAGTGC GCCTCGGCCC GACGGAGTTC
CGGCTGCTGG AATTCCTCAT GTCCTCTCCG GGACGTGTCT TCTCCCGTTC CCAGCTTCTG
GACGGTGTCT GGGGGCACGA CATCTATGTC GACGAACGGA CCGTCGACGT CCATGTCGGG
CGTCTGCGCA AGGCGCTGAA CTTCTCCAAT ATGCCGGATG TCATCCGCAC CGTGCGCGGC
GCGGGCTACT CGTTGGAAAG CTGA
 
Protein sequence
MLPKIAVVED EEALSVLLRY NLEAEGFEVD TILRGDEAEI RLQERLPDLL ILDWMLPGVS 
GIELCRRLRQ RPETERLPII MLTARGEESE RVRGLATGAD DYVVKPFSTP ELMARVKAML
RRAKPEVLST LLRCGDIELD RETHRVHRRS REVRLGPTEF RLLEFLMSSP GRVFSRSQLL
DGVWGHDIYV DERTVDVHVG RLRKALNFSN MPDVIRTVRG AGYSLES