Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_0092 |
Symbol | |
ID | 5320920 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 101142 |
End bp | 104843 |
Gene Length | 3702 bp |
Protein Length | 1233 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640789024 |
Product | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
Protein accession | YP_001325787 |
Protein GI | 150395320 |
COG category | [C] Energy production and conversion [E] Amino acid transport and metabolism |
COG ID | [COG0506] Proline dehydrogenase [COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCCAGA GCCCGCTTCA GAAACCCGCT ATCGATGCTG CACCCGCACC GTTCGCCGAC TTCGCACCGC CGGTCCAGCC GCAAAGCACG CTGCGCCAGG CGATTACGGC CGCATACCGC CGCCCGGAAA CGGAATGCCT GCCTCCGCTC GTCGAGGCGG CGACGCAATC GAAGGAAACA CGGGAAGCCG CATCGAGGAC CGCGCGCAAG CTGATCGAGG CGCTTCGCGG CAAGCACAGC GGCTCCGGCG TCGAAGGGCT CGTGCAGGAA TATTCACTTT CGAGCCAGGA AGGCGTGGCG CTCATGTGCC TTGCGGAAGC GCTGCTGCGC ATTCCCGATA CCGCGACCCG TGACGCGCTC ATCCGCGACA AGATTGCCGA TGGGAACTGG AAATCGCATC TCGGCGGCAG CCGCTCGCTC TTCGTCAATG CGGCGACCTG GGGGCTTGTG GTCACCGGAA AGCTGACCTC CACGGTCAAC GACCGCAGCC TCTCGGCGGC ATTGACAAGG CTCATCTCGC GCTGCGGCGA GCCCGTGATC CGGCGCGGCG TCGACATGGC CATGCGGATG ATGGGCGAAC AGTTCGTCAC CGGCGAGACG ATCGAGGAGG CGCTGAAGCG TTCGAAGGAG CTCGAAGGCA AGGGCTTCCG CTACTCCTAC GACATGCTCG GCGAGGCGGC GACCACCGCC GCCGATGCCG AGCGTTATTA CAGGGATTAT GAGAGTGCCA TTCACGCCAT CGGCAAGGCT TCCGCCGGAC GGGGCATCTA TGAGGGCCCC GGCATCTCGA TCAAGCTCTC GGCGCTGCAT CCCCGCTACA CCCGTGCTCA GGCGGTGCGG GTCATGGGCG AATTGCTGCC CAAGGTGAAG GCGCTCGCCC TGCTCGCCAG GAAATACGAT ATCGGCCTCA ACATCGACGC CGAGGAAGCG GACCGGCTGG AACTCTCGCT CGATCTCCTT GAGGAGCTCT GCCTCGACGC CGAGCTCTCC GGCTGGAACG GCATGGGCTT CGTCGTGCAG GCCTATGGCA AGCGCTGCCC CTTCGTGCTG GACTTCGTCA TCGATCTGGC CCGCCGCTCC GGCCGGCGGA TCATGGTCCG GCTCGTAAAG GGTGCCTATT GGGATGCCGA AATCAAACGC GCGCAGCTCG ATGGGCTCGA GGATTTTCCG GTCTTCACGC GAAAGATCCA TACCGACGTC TCCTATCTCG CCTGCGCAGC CAAGCTGCTT GCCGCGACAG ACGTGATTTT CCCGCAATTC GCGACTCACA ATGCCCAGAC GCTCGCTGCC ATCTACCACA TGGCCGGCAA GGATTTTCAG GTGGGCAAAT ACGAGTTTCA GTGCCTGCAC GGCATGGGCG AGCCGCTTTA CGAAGAGGTC GTCGGCCTCG GAAATCTCGA TCGTCCCTGC CGTATCTATG CTCCGGTCGG CACGCACGAA ACACTGCTTG CCTATCTGGT CCGCCGCCTG CTCGAAAACG GCGCGAACTC TTCCTTCGTG CATCGCATCA ACGACCCGAA GGTCTCGATC GACGAGCTGA TCGCCGATCC CGTCGAAATC GTTCGTGGCA TGCCGGTCGT CGGGGCCAGG CACGACAAGA TCGCCCTGCC CGCCGAACTC TTCGGCGATT CCCGGACCAA CTCCGCCGGG CTCGATCTTT CCAACGAGGA AACGCTTGCG TCCCTCACGG ATGCGCTGAA GGCAAGCGCC GCAAATGGCT GGACTTGCGT TCCGCGGCTC GCAACCGGAC CTGTTGCCGG CGAGACACTG CCTGTTCTGA ACCCCGGCGA TCATCGCGAC GTCGTCGGTT CGGTGACGGA AACCTCGGAA GAGGACGCAA GGCGCGCCGC GCGTCTGGCC GCCGAAGCGG CGGCGGATTG GGCGGCGGTC TCACCCTCCG AGCGCGCCGC CTGCCTGGAC CGCGCCGCCG GCCTCATGCA GGCACGCATG CCGACGCTCC TCGGACTGAT TATCCGGGAA GCGGGCAAGT CGGCGCTGAA CGCCATTGCC GAGGTGCGCG AAGCGATCGA CTTCCTCCGC TACTATGCCG AACAGACGCG TCGTACCCTC GGTCCCGGCC ACAGGCCTCT CGGTCCCGTC GTCTGCATCA GTCCATGGAA CTTCCCGCTG GCGATCTTCA CCGGCCAGAT TGCCGCGGCA CTGGTCGCCG GCAATCCGGT GCTCGCGAAA CCCGCGGAAG AAACGCCCCT GATCGCCGCC GAGGGCGTCC GTATCCTTCA GGAAGCGGGT ATTCCGGCGA GGGCGCTGCA GCTTCTTCCG GGCGACGGCC GCATCGGCGC TGCTCTGGTT GCCGCGCCCG AAACCGCAGG CGTGATGTTT ACCGGATCGA CGGAAGTCGC GCGGCTGATT CAGGCGCAGC TTGCCGACCG CCTCTCGCTA GCCGGCCGGC CGATTCCGCT GATCGCCGAA ACGGGGGGCC AGAACGCCAT GATCGTCGAC TCCTCGGCGC TGGCCGAGCA GGTGGTCGGC GACGTGATCG CCTCCGCCTT CGACAGCGCC GGCCAGCGCT GCTCGGCGTT GCGCGTGCTG TGCCTGCAGG AAGACGTGGC CGAGCGCATC CTGACCATGC TGAAGGGAGC GCTGCACGAA CTGCAGATCG GCCGCACCGA TCGCCTTTCC GTGGACGTCG GACCCGTCAT CACGTCAGAG GCGAAGGAGA ATATAGAAAA GCATATCGCA CGGATGCGCG AGCTCGGCCG CAAGGTCGAG CAGATCGGAC TTGCCTCGGA GACGGACCAG GGCACCTTCG TCCCTCCGAC GATCATCGAA CTCGAAAAAC TTTCCGATCT CGAACGCGAG GTCTTCGGAC CGGTGCTGCA CGTCATTCGC TACCGGCGCG ATGGTCTCGA CCGGCTGGTG GACGACATCA ACGCGACCGG CTATGGCCTC ACCTTCGGCC TGCACACCCG CCTGGACGAG ACGATCGCGC ATGTGACAAG CCGCATCAAG GCAGGCAACC TCTACATCAA CCGAAACATC ATCGGCGCGG TCGTGGGCGT GCAGCCCTTC GGCGGCCGCG GTCTTTCCGG CACCGGGCCG AAGGCGGGCG GTCCGCTTTA TCTCGGCCGC CTTGTCGCCA CCGCACCGGT CCCGCCGCAG CACAGCTCGG TGCACACGGA CCCGGTCCTT CTCGACTTCA CGAAATGGCT GGATGGCAAA GGCGCATGCG CGGAGGCCGA AGCGGCCCGC AATGCCGGGA GCAGCTCGGC TCTCGGCCTT GATCTCGAAT TGCCCGGCCC GGTCGGCGAA CGCAATCTCT ATACCCTCCA TGCGCGCGGC CGCATCCTCC TCGTGCCGGC AACGGCGAGT GGGCTCTATC ACCAGCTTGC CGCCGCCCTT GCAACCGGCA ACAGCGTGGT GATCGATGCT GCCTCCGGCC TGCAGCCTTC GCTGAAAGAC CTGCCGCAAA CCGTCGGCCT GCGTGTCTCC TGGTCCAAGG ATTGGGCTGC CGACGGTCCG TTCGCCGGCG CCCTCGTCGA AGGCGATGGC GAGCGAATCC GCGCGGTCAA TAAAGCGATC GCCGCACTGC CGGGGCCGCT GCTGCTCGTC CAGGCAGCAT CGAGTGAAGA GATCGCCCGC AACCCCGACG CCTATTGCCT GAACTGGCTC GTGGAAGAGG TCTCCGCCTC GATCAACACG GCAGCCGCCG GGGGCAATGC GAGTCTTATG GCGATCGGGT GA
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Protein sequence | MSQSPLQKPA IDAAPAPFAD FAPPVQPQST LRQAITAAYR RPETECLPPL VEAATQSKET REAASRTARK LIEALRGKHS GSGVEGLVQE YSLSSQEGVA LMCLAEALLR IPDTATRDAL IRDKIADGNW KSHLGGSRSL FVNAATWGLV VTGKLTSTVN DRSLSAALTR LISRCGEPVI RRGVDMAMRM MGEQFVTGET IEEALKRSKE LEGKGFRYSY DMLGEAATTA ADAERYYRDY ESAIHAIGKA SAGRGIYEGP GISIKLSALH PRYTRAQAVR VMGELLPKVK ALALLARKYD IGLNIDAEEA DRLELSLDLL EELCLDAELS GWNGMGFVVQ AYGKRCPFVL DFVIDLARRS GRRIMVRLVK GAYWDAEIKR AQLDGLEDFP VFTRKIHTDV SYLACAAKLL AATDVIFPQF ATHNAQTLAA IYHMAGKDFQ VGKYEFQCLH GMGEPLYEEV VGLGNLDRPC RIYAPVGTHE TLLAYLVRRL LENGANSSFV HRINDPKVSI DELIADPVEI VRGMPVVGAR HDKIALPAEL FGDSRTNSAG LDLSNEETLA SLTDALKASA ANGWTCVPRL ATGPVAGETL PVLNPGDHRD VVGSVTETSE EDARRAARLA AEAAADWAAV SPSERAACLD RAAGLMQARM PTLLGLIIRE AGKSALNAIA EVREAIDFLR YYAEQTRRTL GPGHRPLGPV VCISPWNFPL AIFTGQIAAA LVAGNPVLAK PAEETPLIAA EGVRILQEAG IPARALQLLP GDGRIGAALV AAPETAGVMF TGSTEVARLI QAQLADRLSL AGRPIPLIAE TGGQNAMIVD SSALAEQVVG DVIASAFDSA GQRCSALRVL CLQEDVAERI LTMLKGALHE LQIGRTDRLS VDVGPVITSE AKENIEKHIA RMRELGRKVE QIGLASETDQ GTFVPPTIIE LEKLSDLERE VFGPVLHVIR YRRDGLDRLV DDINATGYGL TFGLHTRLDE TIAHVTSRIK AGNLYINRNI IGAVVGVQPF GGRGLSGTGP KAGGPLYLGR LVATAPVPPQ HSSVHTDPVL LDFTKWLDGK GACAEAEAAR NAGSSSALGL DLELPGPVGE RNLYTLHARG RILLVPATAS GLYHQLAAAL ATGNSVVIDA ASGLQPSLKD LPQTVGLRVS WSKDWAADGP FAGALVEGDG ERIRAVNKAI AALPGPLLLV QAASSEEIAR NPDAYCLNWL VEEVSASINT AAAGGNASLM AIG
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