Gene Smed_0092 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0092 
Symbol 
ID5320920 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp101142 
End bp104843 
Gene Length3702 bp 
Protein Length1233 aa 
Translation table11 
GC content65% 
IMG OID640789024 
Productbifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 
Protein accessionYP_001325787 
Protein GI150395320 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism 
COG ID[COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase 
TIGRFAM ID[TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCAGA GCCCGCTTCA GAAACCCGCT ATCGATGCTG CACCCGCACC GTTCGCCGAC 
TTCGCACCGC CGGTCCAGCC GCAAAGCACG CTGCGCCAGG CGATTACGGC CGCATACCGC
CGCCCGGAAA CGGAATGCCT GCCTCCGCTC GTCGAGGCGG CGACGCAATC GAAGGAAACA
CGGGAAGCCG CATCGAGGAC CGCGCGCAAG CTGATCGAGG CGCTTCGCGG CAAGCACAGC
GGCTCCGGCG TCGAAGGGCT CGTGCAGGAA TATTCACTTT CGAGCCAGGA AGGCGTGGCG
CTCATGTGCC TTGCGGAAGC GCTGCTGCGC ATTCCCGATA CCGCGACCCG TGACGCGCTC
ATCCGCGACA AGATTGCCGA TGGGAACTGG AAATCGCATC TCGGCGGCAG CCGCTCGCTC
TTCGTCAATG CGGCGACCTG GGGGCTTGTG GTCACCGGAA AGCTGACCTC CACGGTCAAC
GACCGCAGCC TCTCGGCGGC ATTGACAAGG CTCATCTCGC GCTGCGGCGA GCCCGTGATC
CGGCGCGGCG TCGACATGGC CATGCGGATG ATGGGCGAAC AGTTCGTCAC CGGCGAGACG
ATCGAGGAGG CGCTGAAGCG TTCGAAGGAG CTCGAAGGCA AGGGCTTCCG CTACTCCTAC
GACATGCTCG GCGAGGCGGC GACCACCGCC GCCGATGCCG AGCGTTATTA CAGGGATTAT
GAGAGTGCCA TTCACGCCAT CGGCAAGGCT TCCGCCGGAC GGGGCATCTA TGAGGGCCCC
GGCATCTCGA TCAAGCTCTC GGCGCTGCAT CCCCGCTACA CCCGTGCTCA GGCGGTGCGG
GTCATGGGCG AATTGCTGCC CAAGGTGAAG GCGCTCGCCC TGCTCGCCAG GAAATACGAT
ATCGGCCTCA ACATCGACGC CGAGGAAGCG GACCGGCTGG AACTCTCGCT CGATCTCCTT
GAGGAGCTCT GCCTCGACGC CGAGCTCTCC GGCTGGAACG GCATGGGCTT CGTCGTGCAG
GCCTATGGCA AGCGCTGCCC CTTCGTGCTG GACTTCGTCA TCGATCTGGC CCGCCGCTCC
GGCCGGCGGA TCATGGTCCG GCTCGTAAAG GGTGCCTATT GGGATGCCGA AATCAAACGC
GCGCAGCTCG ATGGGCTCGA GGATTTTCCG GTCTTCACGC GAAAGATCCA TACCGACGTC
TCCTATCTCG CCTGCGCAGC CAAGCTGCTT GCCGCGACAG ACGTGATTTT CCCGCAATTC
GCGACTCACA ATGCCCAGAC GCTCGCTGCC ATCTACCACA TGGCCGGCAA GGATTTTCAG
GTGGGCAAAT ACGAGTTTCA GTGCCTGCAC GGCATGGGCG AGCCGCTTTA CGAAGAGGTC
GTCGGCCTCG GAAATCTCGA TCGTCCCTGC CGTATCTATG CTCCGGTCGG CACGCACGAA
ACACTGCTTG CCTATCTGGT CCGCCGCCTG CTCGAAAACG GCGCGAACTC TTCCTTCGTG
CATCGCATCA ACGACCCGAA GGTCTCGATC GACGAGCTGA TCGCCGATCC CGTCGAAATC
GTTCGTGGCA TGCCGGTCGT CGGGGCCAGG CACGACAAGA TCGCCCTGCC CGCCGAACTC
TTCGGCGATT CCCGGACCAA CTCCGCCGGG CTCGATCTTT CCAACGAGGA AACGCTTGCG
TCCCTCACGG ATGCGCTGAA GGCAAGCGCC GCAAATGGCT GGACTTGCGT TCCGCGGCTC
GCAACCGGAC CTGTTGCCGG CGAGACACTG CCTGTTCTGA ACCCCGGCGA TCATCGCGAC
GTCGTCGGTT CGGTGACGGA AACCTCGGAA GAGGACGCAA GGCGCGCCGC GCGTCTGGCC
GCCGAAGCGG CGGCGGATTG GGCGGCGGTC TCACCCTCCG AGCGCGCCGC CTGCCTGGAC
CGCGCCGCCG GCCTCATGCA GGCACGCATG CCGACGCTCC TCGGACTGAT TATCCGGGAA
GCGGGCAAGT CGGCGCTGAA CGCCATTGCC GAGGTGCGCG AAGCGATCGA CTTCCTCCGC
TACTATGCCG AACAGACGCG TCGTACCCTC GGTCCCGGCC ACAGGCCTCT CGGTCCCGTC
GTCTGCATCA GTCCATGGAA CTTCCCGCTG GCGATCTTCA CCGGCCAGAT TGCCGCGGCA
CTGGTCGCCG GCAATCCGGT GCTCGCGAAA CCCGCGGAAG AAACGCCCCT GATCGCCGCC
GAGGGCGTCC GTATCCTTCA GGAAGCGGGT ATTCCGGCGA GGGCGCTGCA GCTTCTTCCG
GGCGACGGCC GCATCGGCGC TGCTCTGGTT GCCGCGCCCG AAACCGCAGG CGTGATGTTT
ACCGGATCGA CGGAAGTCGC GCGGCTGATT CAGGCGCAGC TTGCCGACCG CCTCTCGCTA
GCCGGCCGGC CGATTCCGCT GATCGCCGAA ACGGGGGGCC AGAACGCCAT GATCGTCGAC
TCCTCGGCGC TGGCCGAGCA GGTGGTCGGC GACGTGATCG CCTCCGCCTT CGACAGCGCC
GGCCAGCGCT GCTCGGCGTT GCGCGTGCTG TGCCTGCAGG AAGACGTGGC CGAGCGCATC
CTGACCATGC TGAAGGGAGC GCTGCACGAA CTGCAGATCG GCCGCACCGA TCGCCTTTCC
GTGGACGTCG GACCCGTCAT CACGTCAGAG GCGAAGGAGA ATATAGAAAA GCATATCGCA
CGGATGCGCG AGCTCGGCCG CAAGGTCGAG CAGATCGGAC TTGCCTCGGA GACGGACCAG
GGCACCTTCG TCCCTCCGAC GATCATCGAA CTCGAAAAAC TTTCCGATCT CGAACGCGAG
GTCTTCGGAC CGGTGCTGCA CGTCATTCGC TACCGGCGCG ATGGTCTCGA CCGGCTGGTG
GACGACATCA ACGCGACCGG CTATGGCCTC ACCTTCGGCC TGCACACCCG CCTGGACGAG
ACGATCGCGC ATGTGACAAG CCGCATCAAG GCAGGCAACC TCTACATCAA CCGAAACATC
ATCGGCGCGG TCGTGGGCGT GCAGCCCTTC GGCGGCCGCG GTCTTTCCGG CACCGGGCCG
AAGGCGGGCG GTCCGCTTTA TCTCGGCCGC CTTGTCGCCA CCGCACCGGT CCCGCCGCAG
CACAGCTCGG TGCACACGGA CCCGGTCCTT CTCGACTTCA CGAAATGGCT GGATGGCAAA
GGCGCATGCG CGGAGGCCGA AGCGGCCCGC AATGCCGGGA GCAGCTCGGC TCTCGGCCTT
GATCTCGAAT TGCCCGGCCC GGTCGGCGAA CGCAATCTCT ATACCCTCCA TGCGCGCGGC
CGCATCCTCC TCGTGCCGGC AACGGCGAGT GGGCTCTATC ACCAGCTTGC CGCCGCCCTT
GCAACCGGCA ACAGCGTGGT GATCGATGCT GCCTCCGGCC TGCAGCCTTC GCTGAAAGAC
CTGCCGCAAA CCGTCGGCCT GCGTGTCTCC TGGTCCAAGG ATTGGGCTGC CGACGGTCCG
TTCGCCGGCG CCCTCGTCGA AGGCGATGGC GAGCGAATCC GCGCGGTCAA TAAAGCGATC
GCCGCACTGC CGGGGCCGCT GCTGCTCGTC CAGGCAGCAT CGAGTGAAGA GATCGCCCGC
AACCCCGACG CCTATTGCCT GAACTGGCTC GTGGAAGAGG TCTCCGCCTC GATCAACACG
GCAGCCGCCG GGGGCAATGC GAGTCTTATG GCGATCGGGT GA
 
Protein sequence
MSQSPLQKPA IDAAPAPFAD FAPPVQPQST LRQAITAAYR RPETECLPPL VEAATQSKET 
REAASRTARK LIEALRGKHS GSGVEGLVQE YSLSSQEGVA LMCLAEALLR IPDTATRDAL
IRDKIADGNW KSHLGGSRSL FVNAATWGLV VTGKLTSTVN DRSLSAALTR LISRCGEPVI
RRGVDMAMRM MGEQFVTGET IEEALKRSKE LEGKGFRYSY DMLGEAATTA ADAERYYRDY
ESAIHAIGKA SAGRGIYEGP GISIKLSALH PRYTRAQAVR VMGELLPKVK ALALLARKYD
IGLNIDAEEA DRLELSLDLL EELCLDAELS GWNGMGFVVQ AYGKRCPFVL DFVIDLARRS
GRRIMVRLVK GAYWDAEIKR AQLDGLEDFP VFTRKIHTDV SYLACAAKLL AATDVIFPQF
ATHNAQTLAA IYHMAGKDFQ VGKYEFQCLH GMGEPLYEEV VGLGNLDRPC RIYAPVGTHE
TLLAYLVRRL LENGANSSFV HRINDPKVSI DELIADPVEI VRGMPVVGAR HDKIALPAEL
FGDSRTNSAG LDLSNEETLA SLTDALKASA ANGWTCVPRL ATGPVAGETL PVLNPGDHRD
VVGSVTETSE EDARRAARLA AEAAADWAAV SPSERAACLD RAAGLMQARM PTLLGLIIRE
AGKSALNAIA EVREAIDFLR YYAEQTRRTL GPGHRPLGPV VCISPWNFPL AIFTGQIAAA
LVAGNPVLAK PAEETPLIAA EGVRILQEAG IPARALQLLP GDGRIGAALV AAPETAGVMF
TGSTEVARLI QAQLADRLSL AGRPIPLIAE TGGQNAMIVD SSALAEQVVG DVIASAFDSA
GQRCSALRVL CLQEDVAERI LTMLKGALHE LQIGRTDRLS VDVGPVITSE AKENIEKHIA
RMRELGRKVE QIGLASETDQ GTFVPPTIIE LEKLSDLERE VFGPVLHVIR YRRDGLDRLV
DDINATGYGL TFGLHTRLDE TIAHVTSRIK AGNLYINRNI IGAVVGVQPF GGRGLSGTGP
KAGGPLYLGR LVATAPVPPQ HSSVHTDPVL LDFTKWLDGK GACAEAEAAR NAGSSSALGL
DLELPGPVGE RNLYTLHARG RILLVPATAS GLYHQLAAAL ATGNSVVIDA ASGLQPSLKD
LPQTVGLRVS WSKDWAADGP FAGALVEGDG ERIRAVNKAI AALPGPLLLV QAASSEEIAR
NPDAYCLNWL VEEVSASINT AAAGGNASLM AIG