Gene Smed_0077 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0077 
Symbol 
ID5320904 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp85094 
End bp85633 
Gene Length540 bp 
Protein Length179 aa 
Translation table11 
GC content62% 
IMG OID640789008 
Producthypothetical protein 
Protein accessionYP_001325772 
Protein GI150395305 
COG category[S] Function unknown 
COG ID[COG4803] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGATT TGATTGTAGT GGGATTCGAT TCGACGGATG AGGCCGACAA GGTCCTCTTG 
AAGCTCAACA GCCTGCGGAA GGAATATCTG ATCGACCTCG AAGATGCGGT GGTCGTCGTG
CGCGACGCAG AAGGAAAGGT GCACCTGAAG CAGAGCCTGA ACCTCACCGC CGTCGGCGCC
ACTTCCGGTC TTCTGTCCGG CTCGCTCTGG GGCGGGCTCG TCGGATTGCT CTTCCTCAAT
CCGATCGCCG GTTTTGCCAT CGGCGGCGCT CTCGGAGCAG GTGCCGGCGC GCTTTCCGGG
TCGCTTGCCG ACTACGGCAT AGACGACGAA TTCATCAAGT CGCTCGGCAA CACCATCCCG
AACGGTTCTT CGGCGCTCTT CGTTCTGGTG CGCAAGGTGC AGCCCGAAAA GGTGCTCGCC
GAGTTTTCGG GCCTTCGCGG CCGCGTGCTG AAGACGTCGC TCTCTCCGGA ACAGGAGCAG
AGGCTTCAGG CAGCGCTCTC ACAAGCGCAG ACACCATCGC CGCAGGCGGG GACGTTCTGA
 
Protein sequence
MSDLIVVGFD STDEADKVLL KLNSLRKEYL IDLEDAVVVV RDAEGKVHLK QSLNLTAVGA 
TSGLLSGSLW GGLVGLLFLN PIAGFAIGGA LGAGAGALSG SLADYGIDDE FIKSLGNTIP
NGSSALFVLV RKVQPEKVLA EFSGLRGRVL KTSLSPEQEQ RLQAALSQAQ TPSPQAGTF