Gene Smed_0071 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0071 
Symbol 
ID5320898 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp79106 
End bp79819 
Gene Length714 bp 
Protein Length237 aa 
Translation table11 
GC content61% 
IMG OID640789002 
Productpyrimidine 5'-nucleotidase 
Protein accessionYP_001325766 
Protein GI150395299 
COG category[R] General function prediction only 
COG ID[COG1011] Predicted hydrolase (HAD superfamily) 
TIGRFAM ID[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01993] pyrimidine 5'-nucleotidase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0142063 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAGC TCGACCGTCA GCCGACCCGT GCCGAATTCG CCCACGTCAC CGACTGGGTC 
TTCGACCTCG ACAACACGCT CTATCCGCAT CACGTCAATC TGTTCTCGCA GATCGACCGC
AACATGACGG CCTATGTCGC CGAACTCCTG TCGCTTGAAC CGGCGGAAGC GAAGAAGCTT
CAGAAGGACT ACTACCGCGA CCACGGCACC ACGCTGCAGG GCCTGATGCT CCACCACGGC
ATCGACCCGA ACGATTTTCT CGAAAGAGCC CACGCCATCG ATTACAGCGT CGTGCCGGCC
GACCCGGCGC TCGGCGAGGC GATCAGGGCT TTACCCGGAC GCAAGTTCAT CTTCACCAAT
GGCAGCGTCG CCCATGCGGA GATGACGGCA AGGGCACTCG GTATCCTCGA GCACTTCGAC
GACATTTTCG ACATCGTCGC GGCCGGTTTC ATACCGAAGC CTGCCGGCGA CACCTACGAC
AAATTCATGG GCCTTCACCG CATCGATACG CAGAACGCGG CCATGTTCGA GGATCTGCCG
CGCAACCTGG TGGTCCCGAA GGCGCTCGGC ATGAAAACGG TGCTGCTCGT ACCGCGCAAT
CTCGAATACG AGTTCGCCGA GGCCTGGGAG ACCTCGAGCG ACGCCGACGA TCAGATCGAC
TATGTCACGG AGGATCTCGC CGCTTTCCTG CGCTGCGTGG TCCCGGCCGT GTAG
 
Protein sequence
MKKLDRQPTR AEFAHVTDWV FDLDNTLYPH HVNLFSQIDR NMTAYVAELL SLEPAEAKKL 
QKDYYRDHGT TLQGLMLHHG IDPNDFLERA HAIDYSVVPA DPALGEAIRA LPGRKFIFTN
GSVAHAEMTA RALGILEHFD DIFDIVAAGF IPKPAGDTYD KFMGLHRIDT QNAAMFEDLP
RNLVVPKALG MKTVLLVPRN LEYEFAEAWE TSSDADDQID YVTEDLAAFL RCVVPAV