Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_0062 |
Symbol | |
ID | 5320889 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 67949 |
End bp | 71134 |
Gene Length | 3186 bp |
Protein Length | 1061 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640788993 |
Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
Protein accession | YP_001325757 |
Protein GI | 150395290 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.410108 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.744352 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATTTCT CACGCTTCTT CGTCGACCGC CCGGTCTTCG CGGGCGTTCT CTCCGTGATC ATCTTCGTCG CGGGCCTGAT CGGCATGACT GGTCTGCCTA TTTCCGAATA TCCGGAAGTC GTGCCGCCGC AGATCGTGGT CAGGGCGCAA TATCCGGGCG CCAATCCGGC CGTCATCGCC GAAACCGTCG CCACACCGCT GGAAGAGCAG ATCAACGGCG TCGAGGGCAT GCTCTACATG CAGAGCCAGG CGACCGCTGA CGGCCTGATG ACCCTGACCG TCACGTTCGA GCTCGGAACC GATCCGGACC AGGCCCAGCA GCTGGTGCAG AACCGCGTCT CGCAGGCTGA GCCGCGCCTG CCCGAAGAGG TCCGTCGGCT CGGCGTCACC ACAGTCAAGA GCTCGCCCGA CCTGACGCTC GTCGTGCACC TGATTTCGCC GAACGGACAG TATGACATCA ATTATCTGCG CAACTACGGC GTCCTCAACG TCAAGGACCG GCTGGCGCGG GTGGACGGCG TGGGGCAAGT GCAGATCTTC GGCGGCGGCG ACTATTCGAT GCGCGTCTGG ATCGACCCCG AAAAGGCGGC CGAGCGCGGC CTGGCCGCGA GCGACATTGC CAATGCTGTC CGGGGGCAGA ACGTTCAGGC CGCCGCCGGC GTCATTGGCG CTTCGCCGTC TGTTCCGGGC CTCGATCTTC AGCTCTCCGT CAACGCCCAG GGGCGCCTCA AGACACCCGA AGATTTCGCC GACATCGTCG TCAAATCGGG CGAGGGCGGT GAGATCACGC GGCTCGGCGA TGTCGCCCGC GTCGAGATGG GGGCGGCGGA CTATTCGCTG CGCTCGCTTC TCGACAACAA GGCCGCCGTC GGCATGGGCG TCTTCCAGGC TCCCGGATCG AACGCCATCG AGATATCCGA AAACGTCCAC AAGGTTATGG CCGAGCTGAA GCAGACCATG CCGGAAGGCG TCGACTACGA GATCGTCTAC GACACGACGC AGTTCGTCCG TGCCTCGATC GAGTCGGTCA TCCATACTCT GCTCGAAGCA ATCGCGCTCG TAGTCATTGT CGTCATCGTC TTCCTGCAGA CCTGGCGCGC CTCGATCATC CCGCTTGTCG CGGTACCCGT ATCGATCGTC GGTACCTTCG CGGTGATGTA TGTTTTCGGC TTTTCGATCA ACGCGCTCAG CCTCTTCGGC CTGGTGCTGG CGATCGGCAT CGTCGTCGAC GACGCCATCG TCGTCGTGGA GAATGTCGAG CGTAACATCT CCCAGGGTCT CTCGCCGGTA CAGGCAACCT ACCGCGCCAT GCAGGAGGTT TCCGGGCCCA TCATCGCGAT CGCGCTCGTG CTCGTCGCGG TATTCGTGCC GCTCGCCTTC ATCACCGGGC TCACCGGCCA GTTCTATCGC CAGTTCGCGC TGACCATCGC GATTTCGACG GTGATTTCCG CACTCAACTC GCTGACGCTC TCGCCAGCGC TCGCTGCCCT TCTTCTGAAG GACCACCACG CGCCTAAGGA CTGGCTGACG CGAGTCATGG ACGGATTGTT CGGGTGGTTC TTCCGAGGCT TCAACCGCTT CTTCGGAGCG AGTTCCGAGG CCTATGGCCG CGGCGTTGGT GGTATTCTCA CCCGCAAGTC GCTGGTCATG GGCGTCTATG TCGTCCTCCT CGGCGTCACC TTCGTGCTCT TCCGCGCCGT GCCCGGCGGC TTCGTGCCGG CCCAGGACAA GCAGTACCTC ATCGGCTTTG CGCAGTTGCC GGACGCAGCG ACGCTCGACC GGTCGGAAGA CGTCATCCGG CGCATGAGCG AGATCGCGCT GAAGCACCCG GGCGTCGAGC ACGCCATCGC ATTCCCGGGA CTGTCGATCA ACGGCTTCAC CAACTCGTCC AATTCGGGCA TCGTCTTCGT CTCGCTGAAG CCGTTCGAGG AGCGCAAGAC GGCCGAGCTT TCGGGCGGCG CCATCGCCAT GCAGTTGAAC CAGGAATTCG GTGCGATACA GGACGCCTTC ATTGCCATGT TCCCGCCGCC GCCCGTGCAG GGTCTCGGTA CGACCGGCGG ATTCAAGCTG CAGATCGAAG ACCGCAACGG CCTCGGCTAC CGGGCGCTCG ACGACGCGGC CAAGGCCGTC CTCGCCAAGG CAATGGCGGC CCCGGAACTG GCCGGACTCT ATTCGAGCTT CCAGATCAAC GTGCCGCAAC TCTATGCCGA TCTTGACCGC ACCAAGGCGC GGCAGCTCGG CGTGGCGGTG ACGGACGTTT TCGAAACGCT GCAGATCTAT CTGGGCTCGC TCTATGTCAA CGACTTCAAT GCGTTCGGCC GGACCTACAG CGTGCGCATC CAGGCCGATG CGAGCTATCG CAGCCATGCC GACGACATCG GCAAGCTGAA GGTGCGTTCG CAGACGGGCG AGATGATCCC CCTATCGGCT CTGCTCAACA TCGAGCAGAC GGTCGGCGCC GAACGGGCGA TCCGCTACAA CGGCTTCCTG GCCGCGGATA TCAACGGCGG GCCGGCACCC GGCTTCTCCT CCGGCCAGGC ACAGGCAGCG ATAGAGCGGA TTGCGGCCGA GACGCTGCCG CCCGGCATTA CATACGAGTG GACGGACCTG ACCTATCAGC AGATCCTCGC CGGCAATTCG GGCATCCTCG TCTTCCCGCT GGCGCTGCTG CTCGTCTATC TCGTGCTTGC CGCCCAATAC GAGAGCCTGC TGCTTCCCAT CGCGATCATC CTGATTGTGC CGATGGGCAT CATGGCGGCG CTGACGGGCG TCTGGCTGAC AGGCGGCGAC AACAACGTCT TCACCCAGAT CGGTCTTATC GTTCTGGTGG GTCTATCGGC CAAGAATGCG ATCCTGATCG TCGAATTCGC ACGCGAATTG GAGTTGTCCG GCAGCAATGC CGTCAGCGCC GCGATCGAGG CAAGCCGGCT CCGCCTGCGG CCCATCCTGA TGACCTCGAT GGCCTTCATC ATGGGCGTCG TTCCACTCGT CACCTCCACC GGCGCGGGTG CCGAGATGCG CTCGGCCATG GGCGTGGCGG TGTTTGCCGG CATGATCGGC GTCACGGCCT TCGGGATCTT CATGACGCCG GTGTTCTATG TGCTCATCCG CAAAGTGTCC GGCGAACGGC CGCTGAAGCA TACCGGGGCG CATCTCGAAG CCCCGCATCT CGCTCCGGGC GAGTGA
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Protein sequence | MNFSRFFVDR PVFAGVLSVI IFVAGLIGMT GLPISEYPEV VPPQIVVRAQ YPGANPAVIA ETVATPLEEQ INGVEGMLYM QSQATADGLM TLTVTFELGT DPDQAQQLVQ NRVSQAEPRL PEEVRRLGVT TVKSSPDLTL VVHLISPNGQ YDINYLRNYG VLNVKDRLAR VDGVGQVQIF GGGDYSMRVW IDPEKAAERG LAASDIANAV RGQNVQAAAG VIGASPSVPG LDLQLSVNAQ GRLKTPEDFA DIVVKSGEGG EITRLGDVAR VEMGAADYSL RSLLDNKAAV GMGVFQAPGS NAIEISENVH KVMAELKQTM PEGVDYEIVY DTTQFVRASI ESVIHTLLEA IALVVIVVIV FLQTWRASII PLVAVPVSIV GTFAVMYVFG FSINALSLFG LVLAIGIVVD DAIVVVENVE RNISQGLSPV QATYRAMQEV SGPIIAIALV LVAVFVPLAF ITGLTGQFYR QFALTIAIST VISALNSLTL SPALAALLLK DHHAPKDWLT RVMDGLFGWF FRGFNRFFGA SSEAYGRGVG GILTRKSLVM GVYVVLLGVT FVLFRAVPGG FVPAQDKQYL IGFAQLPDAA TLDRSEDVIR RMSEIALKHP GVEHAIAFPG LSINGFTNSS NSGIVFVSLK PFEERKTAEL SGGAIAMQLN QEFGAIQDAF IAMFPPPPVQ GLGTTGGFKL QIEDRNGLGY RALDDAAKAV LAKAMAAPEL AGLYSSFQIN VPQLYADLDR TKARQLGVAV TDVFETLQIY LGSLYVNDFN AFGRTYSVRI QADASYRSHA DDIGKLKVRS QTGEMIPLSA LLNIEQTVGA ERAIRYNGFL AADINGGPAP GFSSGQAQAA IERIAAETLP PGITYEWTDL TYQQILAGNS GILVFPLALL LVYLVLAAQY ESLLLPIAII LIVPMGIMAA LTGVWLTGGD NNVFTQIGLI VLVGLSAKNA ILIVEFAREL ELSGSNAVSA AIEASRLRLR PILMTSMAFI MGVVPLVTST GAGAEMRSAM GVAVFAGMIG VTAFGIFMTP VFYVLIRKVS GERPLKHTGA HLEAPHLAPG E
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