| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0061 |
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| Symbol | |
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| ID | 5320888 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 66573 |
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| End bp | 67853 |
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| Gene Length | 1281 bp |
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| Protein Length | 426 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640788992 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_001325756 |
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| Protein GI | 150395289 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.250429 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.531249 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGACAGCAG CCGGCCTATC GGATAAACCG GCACTCTTTG TTTCCGGCTT CGTTTCCTGG
CCCACCGGCT TCGCAGGCAT ACCCTCCATG TTCCCGACCG ATCCCGTTTC CAATCTCGCC
ACCCTCATTC GCTGCCCCTC CGTCACTCCG GCCGAGGGAG GTGCGCTTAC GGCACTCGAA
TCCATGCTGA CGCCGATCGG CTTCAAGGCC GACCGCATCG TGGCGAGGGA GGCGGGCACA
CCCGATATCG AGAACCTTTA CGCGCGGATC GGCGTCGGTG GCCCGCATCT AATGTTTGCC
GGCCACACCG ATGTGGTACC GGTAGGCGAC GAGATTGCCT GGAGCCACCC GCCCTTTTCC
GCCGCCATCG CCGAGGGCGA AATGTATGGA CGCGGCGCCG TGGACATGAA GGGCGGCATC
GCCTGTTTCG TAGCGGCGGT CGCCCGCCAC ATCGAAAAGC ATGGTGCCCC GAAGGGATCC
ATCTCTTTCC TCATCACCGG CGATGAGGAG GGCCCGGCGA TCAACGGCAC TGTGAAGCTC
CTCGAATGGG CGGCCGCGAA GGGAGAGCGC TGGGACGCGT GCCTCGTCGG AGAACCGACC
AATCCGGGCG GCATCGGGGA GATGATCAAG ATCGGCCGGC GCGGCTCGCT CTCCGGCCGG
ATTACCGTTC AAGGGGTCCA GGGCCACGCC GCCTATCCGC ATCTCGCGGA CAATCCCGTA
CGCAGTATCC TGCAGCTCGC CCACGCACTG ATGGACCCGC CTTTTGACGA CGGCACGGAG
AATTTCCAGC CTTCGAATCT CGAAGTCACG ACCATCGATG TCGGCAATGC TGCCGTAAAC
GTCATTCCCG CGAAGGCGAG CGCCGCATTC AACGTCCGGT TCAACGACCT CTGGACGGCC
GAAAGCCTGA TGACCGAGAT CGTCGCACGC CTGGATCGCG CCGCAAGTGC CGGCGCGCTC
AGACCCGGCC GCGCTCCGGT AAAATACGAA ATCGTCTGGA ACGAGCGTCC CAGCCATGTG
TTTCTTACGC GCAACGATGC GCTCATCGAA TCGCTTTCAG GCGCCGTCGA GGCCGTCACA
GGCCAGCAGC CGCGGCTTTC GACCACCGGC GGCACCTCGG ACGCGCGCTT CATCAAGGAC
TATTGCCCGG TCGTCGAATT CGGTCTCGTC GGCAAGACCA TGCATATGGT CGACGAGCGC
GTCGCGCTTG CCGATCTCGA AACCCTGACG GGTATCTACG AAACCTTCAT CGCTCGCTGG
TTCGATCATG CCGCTGCTTG A
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| Protein sequence | MTAAGLSDKP ALFVSGFVSW PTGFAGIPSM FPTDPVSNLA TLIRCPSVTP AEGGALTALE
SMLTPIGFKA DRIVAREAGT PDIENLYARI GVGGPHLMFA GHTDVVPVGD EIAWSHPPFS
AAIAEGEMYG RGAVDMKGGI ACFVAAVARH IEKHGAPKGS ISFLITGDEE GPAINGTVKL
LEWAAAKGER WDACLVGEPT NPGGIGEMIK IGRRGSLSGR ITVQGVQGHA AYPHLADNPV
RSILQLAHAL MDPPFDDGTE NFQPSNLEVT TIDVGNAAVN VIPAKASAAF NVRFNDLWTA
ESLMTEIVAR LDRAASAGAL RPGRAPVKYE IVWNERPSHV FLTRNDALIE SLSGAVEAVT
GQQPRLSTTG GTSDARFIKD YCPVVEFGLV GKTMHMVDER VALADLETLT GIYETFIARW
FDHAAA
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