Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_0057 |
Symbol | |
ID | 5320884 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 59712 |
End bp | 61664 |
Gene Length | 1953 bp |
Protein Length | 650 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640788988 |
Product | putative Chase2 sensor protein |
Protein accession | YP_001325752 |
Protein GI | 150395285 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4252] Predicted transmembrane sensor domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.00712657 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAGGCCT CTCGCCAGCT TCGCCTTTCC TCCCGGCGGG CAAAGCTTGC CGCCCTGGCG GCCTTGGTAG CCGCCCTCGT CTCGCTCGTC TCGCTGACCG GTTCCTGGTC GCTCGTTGAC CTGCGCGCCT ACGACTATCT CTCGATCCTC GGCCGGCCAA ACCTTCCGGA GGACGGCCCC GTTATCGTCG CGATCGACGA ACCGTCGATG GCCGAGATCG GCAGCCAATG GCCCTGGCCG CGCGCTCTGC ACGCCCGGCT GATCCAGTCG CTGAGGGCCG CCGGCGCCAG AGCGGTCGCT CTCGACGTGA TCTTCGCCGA ACCGGCCGCC GCGCCGGAGA ACGATCGCGC GCTCGCCGAA GTCCTGGGAC CCGATGTGGT GCTTGCCGGC GACGAGACGC TGATCCGGAC GCCTCAGGCC GAGCAGTTCG TCCGGACCGA GCCCCTGCCC GTTTTTCTGG AACGCGGCGC CAAGGTGGGC GTCGCTTCGG TCACTCTCAG CGGCGACGGC ATACTCAGGC AGATCCCCTC CTATTCGGAC GGCTTCGCGA CGACGATTGC AAGTGTCGCC GGAGCGGATT TGGCGCGGCC GCCGGGAAGA GCCCTGATGC AGACCTTCGG ACCGGCACGG ACCTATCCGA CCGTTTCCTA TTACCAGGCG CTCGATCCCG AGGCTTTCCT TCCGGAAGGG ACGTTTCGCG ACCGGATCGT CATCGTCGGT CTCAGCCTGC AGAATGCGCC GTCCATCGCG GGCGGCGGCA TCGATGCCTT CGCCACGTCC GATACGGTCT TCTCGCGCGG ACGCGTCGCC GGTGCCGAAA TTCATGCGAC GATTTACGAC AATCTCGTGC ACCGGCTGTT CGTCGAACAG GCCGGAGTGA CGGTTGCCAT CGCAGCGATC ATCCTTGCCA CCCTCGCCGC ATCGCTTGCC GTTTTGAGAT CGACGAGCTG GAAGACGCTC GGTTACGGCG CTCTCGCTCT CGCCTCGATT TTCCTTGCAA GCTACGCACT CATGCGCCTC GGCCATGTCT TCGTCTCGCC GCTTGCCCCG GCGCTTGCTT TCGTCGGCGT AGCCGTCGGG CAGGCCGGCC TCGATTACGC GGAAGAAAGG CGCCGCCGCC GCGAGATCAC GCGCGCCTTC TCGCAATATC TATCCCCCGC GCTGGTGGAG CGCCTGGCAA GCGACCCTTC GCAGCTGAAG CTGGGCGGCG AAAGGCGGAC GCTCACGGTC CTATTCTGCG ACGTTCGTGG CTTCACCACG ATTTCGGAGG ACATGAAGGA TGATCCGGAG GGCCTGACAA CGCTGATCAA CCGGCTTCTG ACACCCCTTT CGGAAGCCGT GCTCAACCGG CGCGGCACAA TCGACAAATA TATCGGCGAC TGCCTGATGG CCTTCTGGAA CGCACCTCTC GACGATCCGG ACCATGCCGT CCATGCGGTT CAGGCGGCGC GCGACATGCT CGCCGCGCTC GCCAAGCTCA ATGCCGAGCT GGAAGCCGAA GCGAAAGCGG CGGGACGCCC ACCCAAGACG CTCAGGATCG GAATCGGCAT CAACACAGGC GAGTGCGTCG TCGGCAATAT GGGCTCGGCC CGCCGCTTCG ATTATTCGGC GCTTGGCGAC GCGGTCAATC TTGCCTCGCG CCTCGAGGGT GCTTCCAAGA ATTACGGCGT GCCGCTGCTC TTGGGCGAGC GGACGGCAGC GCTCGCCGCC TCGGAATTTC CGGTGGCCGA ACTCGACCGC ATCACCGTCA AGGGGCGCAG CGCGGTCTCA CCGGTCTTTA CGGTCGTCGA AGGCGCTTCG GAAGCCGAGC TCGCACGCCA CCGCACCTAC CTCGCCCGGA AATATGACGG CGACCTCCCC GCCGATAACG ACCTGTTGGA CGAACTCAAA TCGGCGCTGC CGCCGCTTCG GCGTTACTAT GAGCGCGAGC GGGAGAAATT CAGAGCGGGA TGA
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Protein sequence | MKASRQLRLS SRRAKLAALA ALVAALVSLV SLTGSWSLVD LRAYDYLSIL GRPNLPEDGP VIVAIDEPSM AEIGSQWPWP RALHARLIQS LRAAGARAVA LDVIFAEPAA APENDRALAE VLGPDVVLAG DETLIRTPQA EQFVRTEPLP VFLERGAKVG VASVTLSGDG ILRQIPSYSD GFATTIASVA GADLARPPGR ALMQTFGPAR TYPTVSYYQA LDPEAFLPEG TFRDRIVIVG LSLQNAPSIA GGGIDAFATS DTVFSRGRVA GAEIHATIYD NLVHRLFVEQ AGVTVAIAAI ILATLAASLA VLRSTSWKTL GYGALALASI FLASYALMRL GHVFVSPLAP ALAFVGVAVG QAGLDYAEER RRRREITRAF SQYLSPALVE RLASDPSQLK LGGERRTLTV LFCDVRGFTT ISEDMKDDPE GLTTLINRLL TPLSEAVLNR RGTIDKYIGD CLMAFWNAPL DDPDHAVHAV QAARDMLAAL AKLNAELEAE AKAAGRPPKT LRIGIGINTG ECVVGNMGSA RRFDYSALGD AVNLASRLEG ASKNYGVPLL LGERTAALAA SEFPVAELDR ITVKGRSAVS PVFTVVEGAS EAELARHRTY LARKYDGDLP ADNDLLDELK SALPPLRRYY EREREKFRAG
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