| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0042 |
|---|
| Symbol | |
|---|
| ID | 5320869 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 43610 |
|---|
| End bp | 44116 |
|---|
| Gene Length | 507 bp |
|---|
| Protein Length | 168 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640788973 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001325737 |
|---|
| Protein GI | 150395270 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0319] Predicted metal-dependent hydrolase |
|---|
| TIGRFAM ID | [TIGR00043] metalloprotein, YbeY/UPF0054 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.215952 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00000000741924 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACGGCAT TGGACATTCA GATCAGCGTC GAGGCGGGCG ACTGGCCGCC CGAGGACGAG
CTTCAGTCTT TTTCCGAGGT CGTTCTCGAG GCTGCCGCCG ATTTTCTCGC GCGTGAGGAG
AGGCAGCCAC TTTCGGCGGA AGCGGCTGAG CTGTCGCTTG TCTTTACGGA CGATCAATCG
ATCAAAGCAA TCAATGCGGA ATGGCGAGGC CAGGACAAGC CGACCAATGT TCTGTCGTTT
CCCGCATTTC CTGTGACGCC AGGCAAGATG CCGGGCCTGA TGCTCGGCGA CATTGTGGTG
GCCCACGAGA CCTTGAGGCG CGAAGCGGCG GAGCTCGAAA AGCCTTTCGA TGCGCATTTG
ACGCACCTTC TCGTCCATGG ATTCCTGCAT CTTTTCGGGT ATGATCATAT CGAAGACGAC
GAAGCGGAGA GAATGGAGCG GTTGGAGACT CGCATTTTGG CGCGTCTTGG CCTATCTGAT
CCCTACGGGG ACCTTCCCCC GGTTTGA
|
|---|
| Protein sequence | MTALDIQISV EAGDWPPEDE LQSFSEVVLE AAADFLAREE RQPLSAEAAE LSLVFTDDQS
IKAINAEWRG QDKPTNVLSF PAFPVTPGKM PGLMLGDIVV AHETLRREAA ELEKPFDAHL
THLLVHGFLH LFGYDHIEDD EAERMERLET RILARLGLSD PYGDLPPV
|
|---|
| |