| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0040 |
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| Symbol | |
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| ID | 5320867 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 41068 |
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| End bp | 42486 |
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| Gene Length | 1419 bp |
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| Protein Length | 472 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640788971 |
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| Product | (dimethylallyl)adenosine tRNA methylthiotransferase |
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| Protein accession | YP_001325735 |
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| Protein GI | 150395268 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0621] 2-methylthioadenine synthetase |
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| TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family
[TIGR01574] tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.000000523218 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACCCAGG AAACCGCTCT TTTGCCGACG TCGCCCGAAG CGGGCGACCT GAACGTCCCG
GCGCGCAAGG TCTTCGTCAA GACTTACGGC TGCCAGATGA ACGTCTATGA CTCCGATCGC
ATGTCGGATG CGCTGTCGCG CGACGGCTAT GTTGCGACCG ATGTCTTGGA AGAGGCCGAT
TTTGTCCTGC TCAATACCTG CCATATTCGC GAAAAGGCCG CAGAGAAGGT CTATTCGGAG
CTCGGCCGCC TGCGTGACCT GAAGAAGGCG AAGGCGCGCG AGGGCCGCGA GATGCTGATC
GGCGTTGCCG GTTGCGTCGC CCAGGCCGAG GGCAAGGAGA TTCTCCGCCG GGCGCCTGCA
GTCGATCTTG TCATTGGGCC GCAGACCTAC CACCGCCTCC CGGAAGCGCT GAGGCGGGCC
CGCACCGGCG AGCGCATCGT GGAAACGGAT TATGCCATCG AGGACAAGTT CGTCCATTTG
CCGGCGCCAG ACAAGGCCAA GACTCGTGCG CGCGGCGTTA CGGCCTTCCT GACGGTACAG
GAAGGCTGCG ACAAGTTCTG TACCTTCTGC GTCGTTCCCT ACACACGCGG CTCGGAAGTC
TCACGTCCCG TGGCACAGAT CGTCGCGGAG GCGGAGAAGC TCGTTGAGGG CGGCGTGCGC
GAAATCACCC TGCTCGGTCA GAATGTCAAC GCCTGGCACG GTGCCGGTCC GCACGGCCGC
GAATGGGGGC TCGGCGATCT CTTGCGGCGT CTCGGCGAGA TCGAGGGGCT CGCGCGCCTG
CGATACACCA CCAGCCACCC CCGCGACATG GACGACAGCC TGATCGAGGC GCATCGGTCG
ATGGCGAAGC TGATGCCCTA TCTGCATCTG CCGGTGCAGT CAGGCTCGGA TCGTATCCTG
AAGGCGATGA ACCGGCGCCA TACGGCAGCC GAATATCTGG CGCTCGTCGC GCGCATTCGA
GCGGTGCAGC CGGACCTTGC GCTTTCGGGC GACTTCATCG TCGGCTTCCC CGGCGAGACC
GATGAGGACT TCGAGGATAC GCTGCGCCTT GTAGATGCCG TGAACTATGC ACAGGCTTTT
TCGTTTAAGT ACTCGACGCG TCCCGGCACG CCGGGCGCCG AACTCGAGCA ACAGGTTCCC
GAGGACGTGA AGGCGAAGAG ATTGGAAATA TTGCAAGCTT TGCTCATCAA GCAGCAGCGC
GGCTTCGCCG AAGCCTGCGT CGGCCGCGAG ATCGACCTGC TGCTGGAGAA GCCGGGCCGC
ATGCCCGGGC AGCTCGTCGG TCGCTCGCCA TGGCTGCAGC CCGTGAATGT TGATGCAAAA
GCATCGCAAA TCGGTGACAT TATCAGAGTG CGAATCACCA AGGCCGGGCC GAACAGCCTG
TTTGCCGAGA TGATCGGGGA AACGGAAGCA AGGAGCTGA
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| Protein sequence | MTQETALLPT SPEAGDLNVP ARKVFVKTYG CQMNVYDSDR MSDALSRDGY VATDVLEEAD
FVLLNTCHIR EKAAEKVYSE LGRLRDLKKA KAREGREMLI GVAGCVAQAE GKEILRRAPA
VDLVIGPQTY HRLPEALRRA RTGERIVETD YAIEDKFVHL PAPDKAKTRA RGVTAFLTVQ
EGCDKFCTFC VVPYTRGSEV SRPVAQIVAE AEKLVEGGVR EITLLGQNVN AWHGAGPHGR
EWGLGDLLRR LGEIEGLARL RYTTSHPRDM DDSLIEAHRS MAKLMPYLHL PVQSGSDRIL
KAMNRRHTAA EYLALVARIR AVQPDLALSG DFIVGFPGET DEDFEDTLRL VDAVNYAQAF
SFKYSTRPGT PGAELEQQVP EDVKAKRLEI LQALLIKQQR GFAEACVGRE IDLLLEKPGR
MPGQLVGRSP WLQPVNVDAK ASQIGDIIRV RITKAGPNSL FAEMIGETEA RS
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