Gene Smed_0016 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0016 
Symbol 
ID5320843 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp14869 
End bp15681 
Gene Length813 bp 
Protein Length270 aa 
Translation table11 
GC content63% 
IMG OID640788947 
ProductABC transporter related 
Protein accessionYP_001325711 
Protein GI150395244 
COG category[R] General function prediction only 
COG ID[COG1137] ABC-type (unclassified) transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.00016595 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGCAGATTC CTTTCCTCCA CAAACGCAAA CGGGGCAAAA AGCCGCCGGC GGCAGCCACA 
GCTGCCCGCG CGGTCGACAA AACCCGCTAT GACGGCACGC TGATAGCCCG CGGCCTGACG
AAGTCCTACC GCTCGCGACG TGTCGTCAAC GGTGTCTCGC TCGTCGTGCG CCGTGGCGAA
GCTGTCGGCC TGCTGGGTCC GAACGGTGCG GGCAAAACGA CCTGTTTTTA CATGATCACC
GGTCTGGTGC CCGTTGACGA GGGCTCGATC GAGATCAACG GCAACGATGT GACGACGATG
CCGATGTACC GCCGGGCGCG GCTCGGCGTC GGCTATCTTC CGCAAGAGGC TTCGATCTTC
CGCGGGTTGA CGGTCGAGGA GAACATACGC GCCGTGCTCG AGGTTCACGA CAACAATGTC
GAACGCCGGG AGAGCAAGCT CAACGACCTG CTTGGCGAAT TTTCGATCAC GCATTTGCGC
ACGTCACCGG CGATTGCGCT TTCGGGCGGC GAGCGGCGGC GCCTTGAAAT CGCCCGTGCA
CTCGCGACCG ACCCAACCTT CATGCTGCTC GACGAGCCCT TCGCGGGCGT CGACCCGATC
TCCGTCGCCG ACATCCAGGC GCTTGTGCGC CATTTGACCT CACGCGGCAT CGGCGTGCTC
ATTACCGACC ACAATGTGCG CGAGACACTC GGCCTGATCG ACCGGGCGTA TATCATCCAT
GCCGGCGAAG TGCTGACGCA TGGACGCGCC AACGACATCG TCACCAATCC CGACGTACGC
AGGCTCTATC TCGGCGACAA TTTCAGCCTC TGA
 
Protein sequence
MQIPFLHKRK RGKKPPAAAT AARAVDKTRY DGTLIARGLT KSYRSRRVVN GVSLVVRRGE 
AVGLLGPNGA GKTTCFYMIT GLVPVDEGSI EINGNDVTTM PMYRRARLGV GYLPQEASIF
RGLTVEENIR AVLEVHDNNV ERRESKLNDL LGEFSITHLR TSPAIALSGG ERRRLEIARA
LATDPTFMLL DEPFAGVDPI SVADIQALVR HLTSRGIGVL ITDHNVRETL GLIDRAYIIH
AGEVLTHGRA NDIVTNPDVR RLYLGDNFSL