| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0015 |
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| Symbol | |
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| ID | 5320842 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 13139 |
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| End bp | 14680 |
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| Gene Length | 1542 bp |
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| Protein Length | 513 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640788946 |
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| Product | RNA polymerase factor sigma-54 |
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| Protein accession | YP_001325710 |
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| Protein GI | 150395243 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.973254 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.000243165 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCCTTGT CCGCCAGCCT TCATTTAAGA CAGTCGCAGT CGCTGGTCAT GACGCCGCAA
CTGATGCAGT CGATCCAGCT GCTGCAGATG AATCATCTGG AGCTCACCCA GTTCATCGCG
CAAGAGATCG AAAAGAACCC GCTGCTGGAG GTCCAATCGC CGTCCGATGA GGCAAGCACG
GCGGAGCGCG GGGATTCAGG ACCTCAGCCG GAGGAGGCCG GCAGCGAAAT CGACGAAGGG
GCAGGCGAGG GCGATGTTTA CGACAGCGCC ACGTCGAGAT CCGGCGAGAG GCTCAGCGAT
GGCCTCGACT CCGACTTCGC CAACGTCTTC CCGGACGACA CGACTCCGCA GCGGGCGGAT
GCGCCCGAGC TGCTCGGCCA ATGGAAGTCT ATGCCGGGCG CGAGCGACGG CGAAAGTTAT
GATCTCGACG ATTTCGTTGC CAGCCGCAAG ACATTGAGGG AGGCGCTCAT CGAGCAGCTT
CCCTTTGCTC TTGGATCGGC CTCCGACCGC CTGATCGCCC AGTATCTCAT CGATCAGCTC
GATGATGCCG GCTATCTGCA CGCCGATCTC GCCGAGACGG CGGAGCGGCT CGGCTCGGCA
AGCGAGGACG TGACGCGCGT ACTCGACGTC CTGCAGCAGT TCGACCCGCC GGGCGTCTTT
GCGCGCACCC TTGGGGAATG CCTTGGCCTT CAGTTGCGCG CCCGCAATCG CCTCGATCCG
GCTATGGAGG CGCTCGTGGG CAACCTCGAT CTCCTGGCAA GGCGCGATTT CGCGAGCCTT
AAAAAGATCT GCGGGGTCGA CGAGGAAGAC CTGATCGACA TGTTTGCCGA GATTCGCAAG
CTCGATCCGA AACCTGGCAC CAGCTTCGAA ACCGGTTCGT TCGAGACGAT CATCCCCGAT
GCCGTGGTTC GCACCGCACC GGATGGCGGC TGGCTCGTGG AGCTCAATCC GGACGCCCTG
CCCCGCGTTC TCGTCAATCA CGAATATTTC GCAGAGATAT CCCGCTCGTG CCGAAAGAGC
AGTGGCGAAC AGATCTTCCT CAATGAATGC CTGCAAAACG CCAACTGGCT GACGCGCAGC
CTCGATCAGC GCGCCAGAAC GATCATGAAG GTGGCAAGCG AGATCGTCCG GCAGCAGGAC
GCTTTTCTCA TGCACGGCGT CGACCATCTG CGCCCGCTAA ACCTCAGGAC CGTCGCGGAT
GCGATCAAGA TGCATGAATC GACGGTGAGC CGGGTGACGT CCAACAAATA CATGCTGACC
CCGCGCGGGC TCTACGAGCT GAAATATTTC TTTACTGTGT CGATCGGCTC GGCCGAAAAC
GGCGATGCCC ACTCGGCCGA GTCCGTGCGC CATCGAATCC GGACGATGGT CAATCAGGAA
AGCGCTGATG CCGTGCTATC GGACGACGAC ATCGTCGATA TCCTGAAGAA GGCGGGCGTA
GACATCGCCA GACGCACGGT CGCAAAATAT CGCGAGGCGA TGCATATCCC CTCCTCTGTC
CAACGCCGCC GGGAAAAGCG CGCACTGGCA AGAGTCGGAT GA
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| Protein sequence | MALSASLHLR QSQSLVMTPQ LMQSIQLLQM NHLELTQFIA QEIEKNPLLE VQSPSDEAST
AERGDSGPQP EEAGSEIDEG AGEGDVYDSA TSRSGERLSD GLDSDFANVF PDDTTPQRAD
APELLGQWKS MPGASDGESY DLDDFVASRK TLREALIEQL PFALGSASDR LIAQYLIDQL
DDAGYLHADL AETAERLGSA SEDVTRVLDV LQQFDPPGVF ARTLGECLGL QLRARNRLDP
AMEALVGNLD LLARRDFASL KKICGVDEED LIDMFAEIRK LDPKPGTSFE TGSFETIIPD
AVVRTAPDGG WLVELNPDAL PRVLVNHEYF AEISRSCRKS SGEQIFLNEC LQNANWLTRS
LDQRARTIMK VASEIVRQQD AFLMHGVDHL RPLNLRTVAD AIKMHESTVS RVTSNKYMLT
PRGLYELKYF FTVSIGSAEN GDAHSAESVR HRIRTMVNQE SADAVLSDDD IVDILKKAGV
DIARRTVAKY REAMHIPSSV QRRREKRALA RVG
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