Gene Smed_0002 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0002 
SymboldnaA 
ID5320829 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp1405 
End bp2850 
Gene Length1446 bp 
Protein Length481 aa 
Translation table11 
GC content62% 
IMG OID640788933 
Productchromosomal replication initiation protein 
Protein accessionYP_001325697 
Protein GI150395230 
COG category[L] Replication, recombination and repair 
COG ID[COG0593] ATPase involved in DNA replication initiation 
TIGRFAM ID[TIGR00362] chromosomal replication initiator protein DnaA 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0480088 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000132312 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCGGCATG ACGCACTCTT CGAGCGGGTA AGTGCGCGTT TGAAAGCCCA GGTCGGACCG 
GATGTCTTCG CGAGTTGGTT TGGGCGCCTC AAGCTTCATT CAGTGTCGAA AAGCGTCGTG
CGCCTCTCGG TCCCGACGAC CTTTCTGAAG TCCTGGATCA ATAATCGTTA TCTCGATCTG
ATCACCTCGC TCGTCCAACA GGAGGACAGC GAGATATTGA AGGTGGAGAT CCTGGTGCGC
ACCGCCACCC GCGGACATCG TCCGGCGGCT CCTGAAGAGA CGGTTTCTGC CGCGGTGGAG
ACGGTGCCCG TCGCTTCTGT TCGCCGTTCT GCGACATCCC CTTCGGTGGC GATCTCTGCC
TCGACCGTTG CGGCAGCTCC GGCGAGGCCC CATCAGACGC CGCTTTTCGG GTCGCCGCTT
GATCAGCGGT ACGGTTTCGA TAGTTTCGTA GAGGGTTCCT CCAATCGGGT CGCGCTCGCG
GCAGCGCGTA CGATTGCCGA GGCCGGCGCC GGCGCCGTGC GCTTCAATCC TCTTTTCATT
CATTCGAGCG TTGGCCTCGG TAAGACCCAT CTGCTGCAGG CGATCGCGCT GGCGGCGCTC
CAGAGTGCCC GGGCGCCGCG CGTCGTTTAT CTGACGGCCG AATATTTCAT GTGGCGTTTC
GCAACGGCAA TCCGCGACAA TGATGCGCTC TCGTTGAAGG AGTCGCTTCG CAACATCGAC
CTTCTCATCA TCGACGATAT GCAGTTTCTA CAGGGCAAGT CGATCCAGCA CGAGTTCTGC
CATCTCCTGA ACATGCTGCT CGACTCCGCC AAACAGGTGG TCGTCGCCGC GGATCGCGCG
CCGTGGGAAT TGGAATCGCT CGACAGCCGC GTTCGCTCGC GCCTTCAGGG AGGTGTCGCG
ATCGAGATGG AAGGGCCGGA CTACGAAATG CGCCTGGAAA TGCTGAAGCG CCGCCTCGAA
GCGGCGCGCC AGGACGATGC GACACTCGAA ATTCCGCTCG AGATCCTGAG CCACGTCGCC
CGCAACGTAA CGGCCAGCGG CCGCGAGCTG GAGGGAGCTT TCAATCAGCT TCTCTTCCGC
CGCTCCTTCG AGCCGCAGCT TTCGATCGAG CGGGTCGATG AACTGCTGGG CCATCTCGTC
AATGCCGGCG AACCGCGCCG GGTCCGCATC GAGGACATCC AGCGCGTCGT GGCCAAGCAT
TACAACGTCT CGCGCCAGGA ACTGGTTTCG AACCGCCGCA CCCGCGTGAT CGTCAAGCCG
CGCCAGATAG CCATGTATCT GTCCAAGACG CTGACTCCGC GTTCCTTTCC GGAGATCGGC
CGCCGCTTCG GCGGACGCGA CCATACGACC GTGCTCCACG CGGTGCGCAA GATCGAAGAG
CTGATTTCGG GCGACACCAA GCTCAGCCAT GAGATCGAGC TGTTGAAGCG CCTGATCAAC
GAATAG
 
Protein sequence
MRHDALFERV SARLKAQVGP DVFASWFGRL KLHSVSKSVV RLSVPTTFLK SWINNRYLDL 
ITSLVQQEDS EILKVEILVR TATRGHRPAA PEETVSAAVE TVPVASVRRS ATSPSVAISA
STVAAAPARP HQTPLFGSPL DQRYGFDSFV EGSSNRVALA AARTIAEAGA GAVRFNPLFI
HSSVGLGKTH LLQAIALAAL QSARAPRVVY LTAEYFMWRF ATAIRDNDAL SLKESLRNID
LLIIDDMQFL QGKSIQHEFC HLLNMLLDSA KQVVVAADRA PWELESLDSR VRSRLQGGVA
IEMEGPDYEM RLEMLKRRLE AARQDDATLE IPLEILSHVA RNVTASGREL EGAFNQLLFR
RSFEPQLSIE RVDELLGHLV NAGEPRRVRI EDIQRVVAKH YNVSRQELVS NRRTRVIVKP
RQIAMYLSKT LTPRSFPEIG RRFGGRDHTT VLHAVRKIEE LISGDTKLSH EIELLKRLIN
E