| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Maeo_1017 |
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| Symbol | secD |
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| ID | 5326258 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanococcus aeolicus Nankai-3 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009635 |
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| Strand | + |
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| Start bp | 1043788 |
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| End bp | 1044963 |
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| Gene Length | 1176 bp |
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| Protein Length | 391 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 640788413 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_001325207 |
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| Protein GI | 150401441 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.562711 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAACCTAT TAAAAGATAC CAAAACATTA ATACTAATAG GATTTATTAT CGCATCTGTG
CTATTAATCG CATTTAAAGG AGTATCTTAT GGTGTTGATT TAAGCGGGGG TTCGATAATA
GTTCTAAAAA CAGAAAAAGT ATTGTCTGAA AGCGAAATGG CTACTACGAC AGAAATATTG
TCAAGTAGGT TAAATGCCAA TGGTTTGAGC GATATATCTG TATATCCTCG TGGAACCAGT
GAAATAGTTG TCGAGATTCC AAAAGGCGTA GATTTAGAAA GAATAAAGCA AATATTAACT
CAACAGGGAG TATTTTATGC CAAAATAGAT GGAAAAATTG CATACACTGG GCAGGATGTA
GCTTATGTCC AGGAACCTGG AATGACCGGA AATGGATATG GGGTTAATTT TAAACTTACA
AATGATGGGG CCAAAAAATT CGCCGAAGTT GCATATGGAA TGGGGGGAAC TCCTGTTGAA
TTATATATGG ATGATAAATT AATAAGTAGT CCAGTATTAT CCCAGGGTCT TGCAGATGGA
AACCTTCACC CCGACCAGGT GATAACGGTG GCAGGAAGTA GCCCTACAAA AGATGACGAA
AATGAAGCAT GGATGATATA TACATCGCTA AAATCTGGTT CGCTCCCCGT TAAAGTTAAT
ATAGAATATA TAAGTTCGGT ATCTCCAACA TTAGGAGAAG AATTTATAAA AGGTTCCATA
ATAGCAGGAT TATTTGCATT CCTTGCAGTT GGTGTAGTTA TTGCAGTTAG GTATAAAACG
CCCACAATAG TTATTCCAAT ATTAATCACC TGTATATCTG AGGTATTAAT TATTTTAGGA
TTTGCATCAC TTATCGGGTG GAAATTAGAC CTTGCGTCTA TTGCAGGAAT TGTTGCATCA
GTTGGGACTG GTGTAGATGA CCAAATTGTA ATTACTGATG AAACCATTTC AGGAGAAAGC
AATAGAATTA AAAGAAGTAT GAACAGGGCA TTCTTTATTA TATTCGCAGC AGCAGGAACC
ACAATAGCTG CAATGTTACC ATTATTCTTT ATGAGTATAG GTATGTTAAG AGGTTTTGCC
ATAACTACAA TAGTTGGTGT TTTAATTGGT ATATTTATCA CAAGACCTGC ATTTGCAAGT
ATGATAAAAT ATGTAATGAA AAAATATAAT TATTAA
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| Protein sequence | MNLLKDTKTL ILIGFIIASV LLIAFKGVSY GVDLSGGSII VLKTEKVLSE SEMATTTEIL
SSRLNANGLS DISVYPRGTS EIVVEIPKGV DLERIKQILT QQGVFYAKID GKIAYTGQDV
AYVQEPGMTG NGYGVNFKLT NDGAKKFAEV AYGMGGTPVE LYMDDKLISS PVLSQGLADG
NLHPDQVITV AGSSPTKDDE NEAWMIYTSL KSGSLPVKVN IEYISSVSPT LGEEFIKGSI
IAGLFAFLAV GVVIAVRYKT PTIVIPILIT CISEVLIILG FASLIGWKLD LASIAGIVAS
VGTGVDDQIV ITDETISGES NRIKRSMNRA FFIIFAAAGT TIAAMLPLFF MSIGMLRGFA
ITTIVGVLIG IFITRPAFAS MIKYVMKKYN Y
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