| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mevan_1577 |
|---|
| Symbol | |
|---|
| ID | 5325388 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanococcus vannielii SB |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009634 |
|---|
| Strand | - |
|---|
| Start bp | 1592737 |
|---|
| End bp | 1594080 |
|---|
| Gene Length | 1344 bp |
|---|
| Protein Length | 447 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 640787269 |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | YP_001324081 |
|---|
| Protein GI | 150400314 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.283423 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTTTATA AAAGTGAATT TTTAGGAATT GAGCCCGTAA AGACGTTACT TATAAAATTA
TCCATTCCAG CTATAATTGG TATGCTTATT ATGGCACTTT ATAACGTAGT TGACGGGTTT
TTTATAGGTA GATGGGTTGG AACACTTGCA TTTACAGGAG TTTCATTAAT ATTCCCATTT
CAAATGGTAG TACTTGCTTT TGGAATTACT TTCGGAATTG GGGGTGCATC AATTTTATCA
AGAAAACTTG GTGAAGGCAA TTTAAAAATT GCAAAAAAAG CTGCTGGAAA TTCAATCAGT
ATGGTGTTAA TTTTATCGTT ATTAATAACA ACACTAGGAA TTTTATTTGC AGTTCCAATT
TTAAATCTTT TAGGGGCTTC TGTTGAGGTA TTTCCTTACG CTAAAGATTA TTATTTAATA
ATTCTCTATG GGACAATATT TAATAGCTAC TTAATTGTTG CAAACAACCT TGTTCGCGCA
GAAGGATTGG CAAAAATTGC AATGTTTGGA ATGGTTTTTC CAGCGGTTTT AAACACAATG
CTTGATGTAC TTTTTATTAT CGGATTAAAC ATGGGTGTAA AAGGGGCTGC AATTGCAACC
GTGATTTCAC AAGTTGTCGG CGTAATTTAT CTTACGTATT ACCAGCTTGG GAAGCATACT
AGTATTAAAT ACAAGGTTAA TGATTTTTTA ATTGATATAA AAACATGCGT AGAGATAATA
CTTATAGGTG CATCCGAATT TGCAAGAACT ATCATGAGTA GCGTTCTTTT AGTACTTGGA
AACAATTTAC TTGGATTTTA TGGCGGGGAC ATTGCAATTG CAATCTTTGG CGTAGTAAAT
CGAATTGCAA TGCTTTTATT TATGCCAGTA CACGGGATAG TTCAAGGACT TCAGCCTATT
GTTGGATATA ACTATGGGAA AGGAAATTTA AAAAGAGTTA GTGAAGCAGT GAAACTTGCG
TTAATCTCGA CTACAAGTCT TTGTTTCTTG GGCTTTATCT TCATAATAGC ATTTCCAGAG
CAATTTATCA GGATATTCAT AACAGATAGT GAGGTAATCT CAAAGGGAAT ACTCCCAATA
AGGATATTTT TCGGATTTTC ATTCTTAATA GGGGCCCAAA TGGTAATTAG CGGATTATAT
CAATCACTTG GAAAAGCATT ACCTGCATTT GTTCTTTCCT GTGCAAGGCA GACTTTATTT
TTAATTCCCC CAATGATTAT TCTTCCAATG TATATCGGGT TAAATGGAAT ATGGCTCGCA
ATACCGTTAG GCGACTTTTT AGGGTTTTTA CTTTCAGTAG GGCTCATATA TATTGATAGA
AAAATGCTAA ACCTTTCATT TTAA
|
|---|
| Protein sequence | MVYKSEFLGI EPVKTLLIKL SIPAIIGMLI MALYNVVDGF FIGRWVGTLA FTGVSLIFPF
QMVVLAFGIT FGIGGASILS RKLGEGNLKI AKKAAGNSIS MVLILSLLIT TLGILFAVPI
LNLLGASVEV FPYAKDYYLI ILYGTIFNSY LIVANNLVRA EGLAKIAMFG MVFPAVLNTM
LDVLFIIGLN MGVKGAAIAT VISQVVGVIY LTYYQLGKHT SIKYKVNDFL IDIKTCVEII
LIGASEFART IMSSVLLVLG NNLLGFYGGD IAIAIFGVVN RIAMLLFMPV HGIVQGLQPI
VGYNYGKGNL KRVSEAVKLA LISTTSLCFL GFIFIIAFPE QFIRIFITDS EVISKGILPI
RIFFGFSFLI GAQMVISGLY QSLGKALPAF VLSCARQTLF LIPPMIILPM YIGLNGIWLA
IPLGDFLGFL LSVGLIYIDR KMLNLSF
|
|---|
| |