Gene Mevan_1207 details

Gene Information

• Locus tag: Mevan_1207
• Symbol: truD
• ID: 5325683
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methanococcus vannielii SB
• Kingdom: Archaea
• Replicon accession: NC_009634
• Strand: +
• Start bp: 1230112
• End bp: 1231281
• Gene Length: 1170 bp
• Protein Length: 389 aa
• Translation table: 11
• GC content: 26%
• IMG OID: 640786897
• Product: tRNA pseudouridine synthase D
• Protein accession: YP_001323717
• Protein GI: 150399950
• COG category: [S] Function unknown
• COG ID: [COG0585] Uncharacterized conserved protein
• TIGRFAM ID: [TIGR00094] tRNA pseudouridine synthase, TruD family

Plasmid Coverage information

• Num covering plasmid clones: 27
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAACTAA GACAAAAACC CGAAGACTTT ATCGTAAATG AGATTTTAGA ATATAAACTT 
GTAGATTATG GAAATTACTC CCTTTATAGG CTTAAAAAAT TAGGGATAGA AAATTTAGCT 
GCAATTTCAT ATATTTCAAA GAATTTTAAG ATTCCGTTAA ATGATATTGG TTACTGTGGT 
TTAAAAGATA GACACGCAAT CACAACCCAA TATATAACTA TTCCAAATGA ATACGGCAGG 
ATATCATTAG ATGAAGAGAA TTTAACTTTA GAATATGTAG GAACTATTGA AAAACCATTA 
AAAATAGGGG AACTTTTTGG AAATTCGTTT GAAATTGTTG CAAGGAATAT CGATAAAAAT 
GATTTTTTAA AATTTGCTGA AAATATCGAC ACTTTAAAGG ACGGAATTCC AAATTATTTT 
GATGAACAGC GTTTTGGAAG TGTTTTTAAT GGTAAATTTA TAATAAAAGA AATTATCAAT 
GAAAATTATG AAAGTGCAGT TAAAATACTA CTTACCAATT ATACAAAAAG TGAAAAAAAG 
TCATTAAAAG ATTTAAAACG GTTCATAGCT AAAAATTGGG GGAATTGGGA TGCATGCATA 
AAATACATTG AAAAAAAACA GATAACAAGC AAAATGTTTA AAAATATGAT AAAGTCCCTT 
AAATATGAAA ATGACTTTAA AAAATCATTT TATTACGTGG ATAATCGATT AAAAGAACTT 
TTTATTTCCG CTTACCAGAG TTATATCTGG AATGAATGTT TAAAGGAAAT TTTAAAAGAA 
AAACTCCAAA AAGATGACAG AAAATACATT GATTACTCTT GTGGAACATT TTTATTTTAC 
AAAAATTTGG AAAAAGATGT TTTTGAAGAT ATTGCTAAAA TCGAGTTTCC AACAATTGCA 
ATTGATAAAG AATACGAGGA ATTTGAAAAT AGGATAATAA ATTCAGTCTT AAAAAAAGAA 
CGGATTAAAA TTGCTGATTT TAAGAAGATA ACCTTTGGAA AATTGAAATA TTCAAAAAGG 
CCAATTATTT CAATCCCTAA AAATGTAGAA ATAGGTAATT TTAAGTCTGA CGAGCTAAAT 
ATAAAAAAAT ATAAACTTAA TTTAAAATTT ACACTTAATA AAGGAAGTTA TGCAACAATG 
GTCGTCAAAA AAATATTTGA AACGTTTTAA 

 

Protein sequence

MKLRQKPEDF IVNEILEYKL VDYGNYSLYR LKKLGIENLA AISYISKNFK IPLNDIGYCG 
LKDRHAITTQ YITIPNEYGR ISLDEENLTL EYVGTIEKPL KIGELFGNSF EIVARNIDKN 
DFLKFAENID TLKDGIPNYF DEQRFGSVFN GKFIIKEIIN ENYESAVKIL LTNYTKSEKK 
SLKDLKRFIA KNWGNWDACI KYIEKKQITS KMFKNMIKSL KYENDFKKSF YYVDNRLKEL 
FISAYQSYIW NECLKEILKE KLQKDDRKYI DYSCGTFLFY KNLEKDVFED IAKIEFPTIA 
IDKEYEEFEN RIINSVLKKE RIKIADFKKI TFGKLKYSKR PIISIPKNVE IGNFKSDELN 
IKKYKLNLKF TLNKGSYATM VVKKIFETF