| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mevan_1196 |
|---|
| Symbol | |
|---|
| ID | 5325524 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanococcus vannielii SB |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009634 |
|---|
| Strand | + |
|---|
| Start bp | 1218888 |
|---|
| End bp | 1222283 |
|---|
| Gene Length | 3396 bp |
|---|
| Protein Length | 1131 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 640786886 |
|---|
| Product | DNA polymerase II large subunit |
|---|
| Protein accession | YP_001323706 |
|---|
| Protein GI | 150399939 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1933] Archaeal DNA polymerase II, large subunit |
|---|
| TIGRFAM ID | [TIGR00354] DNA polymerase, archaeal type II, large subunit
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCCATG TTTCAGCTTC AAAAAATATG ACTGAATATT TTAAATCGAT TTTAAATGAT
GTGAATAACC TGTATTTTAT TGCGGAAGAA TGTAGGAAAC TTGGATATGA TGTAGTGGAT
AAAGTAGAGA TTCCCTTGGC AAAAGACATG GCAGATCGGG TTGAAGGTAT TGTGGGGCCT
CCAAAAGTTT CTGAAAGAAT ACGGGAATTG GTAATGGAAC TTGGAAAAGA ACCTGCAGCA
CTTGAAATTG CAAAAGAAAT TGTAGAAGGT AGATTTGGAG AATTTGGGAA AGAAGAAGGT
GCTGAACAGG CAGTAAGGAC AGCTTTAGCA GTAATTACCG AAGGAATTGT TGCAGCACCT
CTTGAAGGTA TAGCCCACGT TAAGATAAAA AAAAATCATG ACGGTACGGA ATATCTTGCA
ATATATTTTG CAGGACCCAT AAGGAGTGCA GGGGGAACTG CACAAGCTTT AGCGGTTCTT
GTTGGGGATT ATGTTCGGAA AAATATGAAC TTAGATAAAT TTAAGCCAAC AGACGATGAA
GTTGAGCGTT ATGGTGAAGA AATAGACCTT TACCAATCCG AAGTCACTAC TTTTCAATAC
CAGCCAAAAA TAGAAGAAAT AAGAACTGCT GTAAGAAATA TTTCTGTTGA AATCACAGGT
GAGGCAACAG ACGATGTTGA AGTTAGTGGA CACAGGGATT TAGAACGGGT TGAAACAAAC
CAAATTCGTG GAGGAGCCCT TTTAGCACTG GTTGAAGGAG TACTTTTAAA AGCACCTAAA
ATCTTAAGAC ACGTTGATAA ACTTGAAATT GAAGGCTGGA ATTGGTTAAA AGAACTTAAA
AATAAAAAAG AAGAAATTAA TGAAGATATT AAAGATGAAA AAGAAGATTT TAACTACGAA
GAAGAAGAGG ACTTATCTCA ATACGATGAC TGTGAAATAG AGGAAGTTAC GAAATTTATC
GGGGAAGTTA TTGCCGGAAG GCCAGTATTT GCACACCCTT CAAAAAAAGG CGGATTTAGA
TTGAGGTACG GTAGAAGCAG AAATACAGGA TTTGCAACTG ATGGGTTTCA TCCTGCAATA
ATGTATTTAG TAGATGATTT TATGGCAGTT GGGACCCAGT TAAAGACTGA ACGTCCTGGA
AAGGCAACAT GCGTTGTTCC TGTTGATAGT ATCGACCCTC CGATAGTTAA ATTAAATAAT
CATAGTGTTT TAAAAATTGA TACTGTAGAA AAAGCTATCA AGTATAGAAA AGACGTGTTA
GAAATCTTAT TTTTAGGAGA TATTCTCGTA AACTATGGGG ATTTTTTAGA AAATAACCAC
GTAATGCTTC CAAGTAGTTG GTGCGTTGAA TGGTACGAAA AAATACTCAA AGTTAATAAT
ATACCCTATT CAACAGAATT CATAAGTAAT CCTAGCCCAA AAGAAGCGGT AAAGTTTGCA
ATAACGACAA AAACACCGCT TCATCCAGTT TATACTTACC ATTGGCATGA TATCTCCAAA
GAAAATATTT ATTCGCTTAG AAATTGGATT TTAAGAGGTA ATTTTAATAA AAATAGTGAT
AAATGGGAGA TTTCTTATGA CCTAGAAAAT CCTGAAGATA TATCAAATAA GAGATTTTTA
GAACTAATTG GGTGCTGTCA CGAGGTAGTT GACGGTAAAA TTTTTATTTT AGAATATTAT
CCATTACTCT ATTCTTTAGG CTACGATTAT GAAAATAGTT TTGATAGTGT AGAAAATCTT
GAAGAAAAAG TTTCCAATGC CAAAAACAAC ATGCACCTAA TAAACCTGCT TTCGCATTTT
GAAATTCGAA GAAATACTTA TATTTACGTG GGTGCAAGAA TGGGTAGGCC AGAAAAAGCG
GCTTCCCGTA AGATGAAACC GCCTGTAAAT GGATTATTTC CAATTGGGAA TGCAGGGGCA
CTCGTAAGGC TAATAAATAA GGCAGTTGAA GGGGGAAAAA CTGACGAAAT TGAAATTTCA
AATGTAATGT GCAGTTGTGG AAAAGTTAGC CTTTATAAAA AATGCCCGTT TTGTGGAAAA
TCTGTTATTC CAACAGGCCC AACAAGAATA AAACTTCCAA TAAAAGATTA TTGGTACAAT
GCACTTGAAA ATTTAAAAAT AAATAAGCCA GGGGATGTAA AATGTATTAA AGGAATGACC
TCAAAAGATA AAATAATAGA GCCCTTAGAA AAAGCAATTT TACGAGCTGT AAATGATGTT
TATGTATTTA AAGATGGTAC TACCCGATTT GACTGTACGG ATGTTCCTGT AACTCACTTT
AAACCTTGCG AAATTAATGT TAGTGTAAAT CGGTTAAAAG AACTTGGTTA TTTAAGAGAT
ATAAATGGCA ACTCATTAGA AAATGACAAA CAGGTATTGG AATTAAAAGT ACAGGATGTA
ATAGTTCCTG AGTCGTGTAT GGATTATTTT TTAAACGTTT CAAAATTTAT AGATGATTTA
CTTGAAAAAT ACTATAAAAA AAATAGGTAT TATAACTCTT CAAATAAAGA AGACTTAGTT
GGACACTTGA TTATAGGAAT GGCTCCTCAC ACTTCTGCAG GAATGGTTGG AAGAATTGTA
GGATACAGTA AAGCAAATGT AGGATATGCA CATCCTTATT TTCACGCATC AAAACGTAGA
AACTGTGATG GGGATGAAGA TGCATTTTTC CTGTTACTTG ATGCATTCCT CAATTTTTCA
AAAAAATTTT TACCTGATAA AAGAGGGGGG CAAATGGATG CTCCACTAGT ACTTACAACG
ATATTGGATC CAAAAGAAGT TGACGGTGAA GTTCACAACA TGGATTCAAT GTGGGAGTAC
CCTCTTGAAT TTTATGAAAA ATCCTTAGAA ATGGTTACTC CAAAAGAAAT TAAAAAATTG
ATGGAAACAG TAGAAGATAG ACTAGGTAAA GATGAACAGT ATGAAGGAAT TGGCTATACT
CATGAAACTT TAAAAATTGA TGAAGGGCCA CTCATATGTT CATATAAAAC CTTAGGTTCA
ATGATGGATA AAACTTCGGC TCAACTTGCA GTTGCAAAAA AGATACGTGC AACTGATGAA
CGGGATGTTG CAGAAAAAGT TATACAGTCC CACTTTGTAC CTGATTTGAT AGGTAATTTA
CGGGCATTTT CAAGACAGGG GGTAAGATGT AAATGTGGTG CAAAATATCG AAGAATACCT
CTAAAAGGAG TATGTAGGAA GTGCGGCAGT AGGTTAATTT TAACAGTTTC AAAAGGGGCA
GTTGAAAAGT ACATGAATGT TTCACAAACC ATGGCTGAAA AATACAATGT AAGTGACTAT
ATAAAACAGA GATTAGAAAT TATACGAAGT GGAATTGATA GCCTCTTTAC AAATGATAAG
AGAAAGCAGG TTAAAATTGA GGATTTTTTT AAATAA
|
|---|
| Protein sequence | MLHVSASKNM TEYFKSILND VNNLYFIAEE CRKLGYDVVD KVEIPLAKDM ADRVEGIVGP
PKVSERIREL VMELGKEPAA LEIAKEIVEG RFGEFGKEEG AEQAVRTALA VITEGIVAAP
LEGIAHVKIK KNHDGTEYLA IYFAGPIRSA GGTAQALAVL VGDYVRKNMN LDKFKPTDDE
VERYGEEIDL YQSEVTTFQY QPKIEEIRTA VRNISVEITG EATDDVEVSG HRDLERVETN
QIRGGALLAL VEGVLLKAPK ILRHVDKLEI EGWNWLKELK NKKEEINEDI KDEKEDFNYE
EEEDLSQYDD CEIEEVTKFI GEVIAGRPVF AHPSKKGGFR LRYGRSRNTG FATDGFHPAI
MYLVDDFMAV GTQLKTERPG KATCVVPVDS IDPPIVKLNN HSVLKIDTVE KAIKYRKDVL
EILFLGDILV NYGDFLENNH VMLPSSWCVE WYEKILKVNN IPYSTEFISN PSPKEAVKFA
ITTKTPLHPV YTYHWHDISK ENIYSLRNWI LRGNFNKNSD KWEISYDLEN PEDISNKRFL
ELIGCCHEVV DGKIFILEYY PLLYSLGYDY ENSFDSVENL EEKVSNAKNN MHLINLLSHF
EIRRNTYIYV GARMGRPEKA ASRKMKPPVN GLFPIGNAGA LVRLINKAVE GGKTDEIEIS
NVMCSCGKVS LYKKCPFCGK SVIPTGPTRI KLPIKDYWYN ALENLKINKP GDVKCIKGMT
SKDKIIEPLE KAILRAVNDV YVFKDGTTRF DCTDVPVTHF KPCEINVSVN RLKELGYLRD
INGNSLENDK QVLELKVQDV IVPESCMDYF LNVSKFIDDL LEKYYKKNRY YNSSNKEDLV
GHLIIGMAPH TSAGMVGRIV GYSKANVGYA HPYFHASKRR NCDGDEDAFF LLLDAFLNFS
KKFLPDKRGG QMDAPLVLTT ILDPKEVDGE VHNMDSMWEY PLEFYEKSLE MVTPKEIKKL
METVEDRLGK DEQYEGIGYT HETLKIDEGP LICSYKTLGS MMDKTSAQLA VAKKIRATDE
RDVAEKVIQS HFVPDLIGNL RAFSRQGVRC KCGAKYRRIP LKGVCRKCGS RLILTVSKGA
VEKYMNVSQT MAEKYNVSDY IKQRLEIIRS GIDSLFTNDK RKQVKIEDFF K
|
|---|
| |