Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SaurJH1_2688 |
Symbol | |
ID | 5315953 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Staphylococcus aureus subsp. aureus JH1 |
Kingdom | Bacteria |
Replicon accession | NC_009632 |
Strand | - |
Start bp | 2786094 |
End bp | 2787803 |
Gene Length | 1710 bp |
Protein Length | 569 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 640780797 |
Product | choline dehydrogenase |
Protein accession | YP_001317797 |
Protein GI | 150395122 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
TIGRFAM ID | [TIGR01810] choline dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTAACA AAAATAAATC ATATGATTAT GTCATCATTG GAGGAGGCAG TGCAGGTTCT GTACTAGGTA ATCGTCTGAG TGAAGATAAA GATAAAGAAG TCTTAGTATT AGAAGCGGGT CGCAGTGATT ATTTTTGGGA TTTATTTATC CAAATGCCTG CTGCGTTAAT GTTCCCTTCA GGCAATAAAT TTTACGATTG GATTTATTCA ACAGATGAAG AACCACATAT GGGCGGTCGT AAAGTAGCAC ATGCCCGAGG TAAAGTTTTA GGTGGATCAA GTTCGATTAA TGGCATGATT TATCAACGTG GTAATCCAAT GGACTATGAA GGCTGGGCAG AACCAGAAGG TATGGAAACT TGGGATTTTG CGCACTGTTT ACCGTATTTT AAAAAATTAG AAAAAACATA CGGTGCAGCG CCTTATGATA AATTTAGAGG CCATGATGGA CCAATTAAGT TAAAACGAGG GCCAGCAACG AATCCTTTAT TCCAGTCATT CTTTGATGCA GGTGTTGAAG CAGGTTATCA TAAAACACCT GATGTGAATG GATTTAGACA AGAAGGTTTT GGACCGTTCG ATAGTCAAGT ACATCGTGGT CGCCGAATGT CAGCTTCAAG AGCATATTTA CATCCAGCGA TGAAGCGTAA AAACTTAACC GTTGAAACAC GTGCCTTTGT AACTGAAATT CATTATGAAG GTAGAAGAGC AACTGGTGTT ACGTATAAGA AAAATGGCAA ACTACATACC ATCGATGCTA ATGAAGTCAT TTTGTCTGGT GGGGCATTCA ATACGCCACA ATTACTACAA TTATCTGGTA TCGGTGATTC AGAGTTCCTA AAATCAAAAG GCATTGAGCC ACGTGTTCAT TTACCAGGTG TGGGTGAAAA CTTTGAAGAT CACTTAGAGG TATACATTCA ACATAAATGT AAGGAACCTG TATCATTACA GCCAAGCTTA GATATCAAGC GCATGCCATT TATTGGTTTA CAATGGATTT TCACACGTAC AGGTGCAGCA GCATCTAACC ATTTTGAAGG TGGCGGATTT GTACGTTCAA ATAACGAAGT TGATTATCCT AACTTAATGT TCCATTTCTT ACCAATAGCT GTAAGATATG ATGGTCAAAA GGCAGCGGTC GCACATGGTT ATCAAGTTCA CGTAGGACCA ATGTATTCAA ACTCTCGTGG TAGCTTGAAA ATCAAATCTA AAGATCCATT CGAAAAACCA AGTATCCGCT TTAATTATTT ATCAACAGAA GAAGATAAAA AAGAATGGGT AGAAGCAATT CGTGTAGCAA GAAATATCTT ATCTCAAAAA GCAATGGATC CATTCAATGG TGGAGAAATT TCACCAGGAC CAGAAGTGCA AACAGACGAA GAAATTCTTG ATTGGGTTCG TAGAGATGGT GAAACAGCAT TACACCCATC TTGTAGTGCT AAAATGGGTC CTGCTTCAGA TCCAATGGCA GTAGTTGACC CGTTAACAAT GAAAGTCCAC GGTATGGAAA ATTTACGTGT AGTTGATGCA TCCGCTATGC CACGTACGAC AAATGGCAAT ATACACGCAC CTGTTTTAAT GTTAGCTGAA AAAGCAGCAG ACATTATACG TGGCAGAAAG CCTTTAGAGC CACAATATAT TGATTATTAT AAGCATGGTG TTCATGATGA AAATGAAGGT GCAATCGAAG TAAAACCATA CGCTAAATAA
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Protein sequence | MSNKNKSYDY VIIGGGSAGS VLGNRLSEDK DKEVLVLEAG RSDYFWDLFI QMPAALMFPS GNKFYDWIYS TDEEPHMGGR KVAHARGKVL GGSSSINGMI YQRGNPMDYE GWAEPEGMET WDFAHCLPYF KKLEKTYGAA PYDKFRGHDG PIKLKRGPAT NPLFQSFFDA GVEAGYHKTP DVNGFRQEGF GPFDSQVHRG RRMSASRAYL HPAMKRKNLT VETRAFVTEI HYEGRRATGV TYKKNGKLHT IDANEVILSG GAFNTPQLLQ LSGIGDSEFL KSKGIEPRVH LPGVGENFED HLEVYIQHKC KEPVSLQPSL DIKRMPFIGL QWIFTRTGAA ASNHFEGGGF VRSNNEVDYP NLMFHFLPIA VRYDGQKAAV AHGYQVHVGP MYSNSRGSLK IKSKDPFEKP SIRFNYLSTE EDKKEWVEAI RVARNILSQK AMDPFNGGEI SPGPEVQTDE EILDWVRRDG ETALHPSCSA KMGPASDPMA VVDPLTMKVH GMENLRVVDA SAMPRTTNGN IHAPVLMLAE KAADIIRGRK PLEPQYIDYY KHGVHDENEG AIEVKPYAK
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