Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_6503 |
Symbol | |
ID | 5320806 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009622 |
Strand | + |
Start bp | 193025 |
End bp | 194950 |
Gene Length | 1926 bp |
Protein Length | 641 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640778055 |
Product | TIR protein |
Protein accession | YP_001314987 |
Protein GI | 150378393 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.985723 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGTTTG ATTTCTCCAC ACTTTCTCCG GATGACTTCG AGAACCTGAG TCGCGATCTT GTGGGCGCCG AAACCGGCGT TCGGTTCGAA GCGTTCACCG TTGGCGCAGA TGAGGGTATG GATGGGCGCC ACGCCAAAGC CGATGGTTCG ATCATCCTCC AGGCCAAGCA CTATCTCCGA TCTGGCTTCT CGAAACTCAA GTCGAAGATG CGAGAGGAAC GTGTTTCAAT CGACGAACTG GCCCCGCAAC GATACATTCT GACGACGTCC GTACCGCTTA CCCCGGCAAA CAAGGCAACG CTGTCGGAAA TTATCGGACC AAGCCTAGCC GGACCCGGCG ACATATTCGG CGCGGACGAC CTCAACGGCT TGCTCAGATC CTATCCTGAG GTCGTGAAGG CTCATGAAGG GCTCTGGGCA CACAGCACCC CAGTGCTCGA AGAAGTCGTC ACCAACGCGG TGCGCAAGGC AATGGCGCCG GCGGAGGTTC CCAAAACGCT CGCTCGCCTG ATGCCGCCAC TCGGGGCAGC GACCGATGCT CAGATCGAGC CCGTAAAGCG CGATACGATC TTCATAATCA AGGCTTCACC CAGCGACGAC GAGTTCACGC TATGGCTTGC TCCAAAGCTT GAGGCCGAGG GCTACCAGGT CTTTGCCGAC GTGCTCACCC TCATGCCTGG CGAACGTTGG CGACGGGAGA TAACCAGTGC GCTGCGCCAT CGCGCGGTCA AGGTCCTGCT GCTCTGCCGT GATTCCAGTC TTGGGGATAG CAGCATCCAG GACGACCTCG ACATTGCTCT GGAAACGGGA AAGGAACTCG GTGATCAGCG GTTTGTCATT CCGCTACGCA TGGAGACGTT TCGGAAGATC AAAGGTCTCG GCGACACTGT CGCGGTAGAT TTCGTTCGAA ATTGGGGAGA AGGCCTGCTC AAGCTCATCG ATACCCTGCA ACGGCAAAAA GTCCCGCGCA GCGTCGACAC GATGATAAAC CCGTACTGGG AAATCTATCG CCGGCGTGGC GCCGTGCCGA TCATCGACGT TCCCGAGCGA CTGACCTCAA ACTGGCTTCT GGTCGCCGAG GCGCCAGATT TCATCCGATA CTTCGAATGC TCGGGAGCGA TCAACAAAGG GCGCCTCCAG GGAGCGATCG ACAGCTATGG ACATCCTTGC GCATTGGTCG GGGGATCAGG TTTTCTGGCA TTCGGTGGCG TGCCGGAAAT CGAAATGGCA TTCGAAGCCG TCGGCCGCTT CAAGCTGAAA CATGAAATTC CGCTCGTGGA ATTCACGGAG GGCGGCTTCC AACGACTGCG AATTGACCGC CAGACCGCCT CCAACCTCGT TGTTGCGATG CTCAAGAAGG CCTGGTTCAA CTACTGCAAA CGCCACGGTT TCGTCGAACA CGGATATTCG AATGGCATCG GCTTCCACGC GTCGCCAGAA CAGGCGCCGA CGGGCAAGCG AATTCCGTGG GGGAACCAGG CCGAGAAGAA GCGGTCATCG ATGCTGCGCA ATTCCGCTAA AGGCCATATC TGGCAATTCG GTGTGACTGC CATGCCAGCT TTCTGGCCAT TCTGGCACTT CAAGCTGAAG TCGAGGGTCC TGTTTGCGCA AGATAACGGC ACCCCAGCCG GCCTTGTTGT CGACGATCCC AAGAAGCGAC ACCGCTTGAG GCGATCGGTG TGTAAGGGAT GGCGCAACAA GCAGTGGTAC GGGCGCCTTC TCGCGTTTCT AGAATTGCTT TCCGGAGAAT CGGCTTTTGT GCGCCTCCCT CTTTCCGAGA CGGAAACCTT CGTTCTCGAG GCCTCGCCGA TGCTGTTCTC ATCTCCGGTC AGTACCGTTC TTCCAAACGA CCTCGATGAT GAGGACGAGG AGCTGGATGA AAGCACTCTC GGGCGGCCTG ACAGTGATGA GGAGGGCGGC GAATGA
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Protein sequence | MKFDFSTLSP DDFENLSRDL VGAETGVRFE AFTVGADEGM DGRHAKADGS IILQAKHYLR SGFSKLKSKM REERVSIDEL APQRYILTTS VPLTPANKAT LSEIIGPSLA GPGDIFGADD LNGLLRSYPE VVKAHEGLWA HSTPVLEEVV TNAVRKAMAP AEVPKTLARL MPPLGAATDA QIEPVKRDTI FIIKASPSDD EFTLWLAPKL EAEGYQVFAD VLTLMPGERW RREITSALRH RAVKVLLLCR DSSLGDSSIQ DDLDIALETG KELGDQRFVI PLRMETFRKI KGLGDTVAVD FVRNWGEGLL KLIDTLQRQK VPRSVDTMIN PYWEIYRRRG AVPIIDVPER LTSNWLLVAE APDFIRYFEC SGAINKGRLQ GAIDSYGHPC ALVGGSGFLA FGGVPEIEMA FEAVGRFKLK HEIPLVEFTE GGFQRLRIDR QTASNLVVAM LKKAWFNYCK RHGFVEHGYS NGIGFHASPE QAPTGKRIPW GNQAEKKRSS MLRNSAKGHI WQFGVTAMPA FWPFWHFKLK SRVLFAQDNG TPAGLVVDDP KKRHRLRRSV CKGWRNKQWY GRLLAFLELL SGESAFVRLP LSETETFVLE ASPMLFSSPV STVLPNDLDD EDEELDESTL GRPDSDEEGG E
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