Gene Smed_6503 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_6503 
Symbol 
ID5320806 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009622 
Strand
Start bp193025 
End bp194950 
Gene Length1926 bp 
Protein Length641 aa 
Translation table11 
GC content58% 
IMG OID640778055 
ProductTIR protein 
Protein accessionYP_001314987 
Protein GI150378393 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.985723 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGTTTG ATTTCTCCAC ACTTTCTCCG GATGACTTCG AGAACCTGAG TCGCGATCTT 
GTGGGCGCCG AAACCGGCGT TCGGTTCGAA GCGTTCACCG TTGGCGCAGA TGAGGGTATG
GATGGGCGCC ACGCCAAAGC CGATGGTTCG ATCATCCTCC AGGCCAAGCA CTATCTCCGA
TCTGGCTTCT CGAAACTCAA GTCGAAGATG CGAGAGGAAC GTGTTTCAAT CGACGAACTG
GCCCCGCAAC GATACATTCT GACGACGTCC GTACCGCTTA CCCCGGCAAA CAAGGCAACG
CTGTCGGAAA TTATCGGACC AAGCCTAGCC GGACCCGGCG ACATATTCGG CGCGGACGAC
CTCAACGGCT TGCTCAGATC CTATCCTGAG GTCGTGAAGG CTCATGAAGG GCTCTGGGCA
CACAGCACCC CAGTGCTCGA AGAAGTCGTC ACCAACGCGG TGCGCAAGGC AATGGCGCCG
GCGGAGGTTC CCAAAACGCT CGCTCGCCTG ATGCCGCCAC TCGGGGCAGC GACCGATGCT
CAGATCGAGC CCGTAAAGCG CGATACGATC TTCATAATCA AGGCTTCACC CAGCGACGAC
GAGTTCACGC TATGGCTTGC TCCAAAGCTT GAGGCCGAGG GCTACCAGGT CTTTGCCGAC
GTGCTCACCC TCATGCCTGG CGAACGTTGG CGACGGGAGA TAACCAGTGC GCTGCGCCAT
CGCGCGGTCA AGGTCCTGCT GCTCTGCCGT GATTCCAGTC TTGGGGATAG CAGCATCCAG
GACGACCTCG ACATTGCTCT GGAAACGGGA AAGGAACTCG GTGATCAGCG GTTTGTCATT
CCGCTACGCA TGGAGACGTT TCGGAAGATC AAAGGTCTCG GCGACACTGT CGCGGTAGAT
TTCGTTCGAA ATTGGGGAGA AGGCCTGCTC AAGCTCATCG ATACCCTGCA ACGGCAAAAA
GTCCCGCGCA GCGTCGACAC GATGATAAAC CCGTACTGGG AAATCTATCG CCGGCGTGGC
GCCGTGCCGA TCATCGACGT TCCCGAGCGA CTGACCTCAA ACTGGCTTCT GGTCGCCGAG
GCGCCAGATT TCATCCGATA CTTCGAATGC TCGGGAGCGA TCAACAAAGG GCGCCTCCAG
GGAGCGATCG ACAGCTATGG ACATCCTTGC GCATTGGTCG GGGGATCAGG TTTTCTGGCA
TTCGGTGGCG TGCCGGAAAT CGAAATGGCA TTCGAAGCCG TCGGCCGCTT CAAGCTGAAA
CATGAAATTC CGCTCGTGGA ATTCACGGAG GGCGGCTTCC AACGACTGCG AATTGACCGC
CAGACCGCCT CCAACCTCGT TGTTGCGATG CTCAAGAAGG CCTGGTTCAA CTACTGCAAA
CGCCACGGTT TCGTCGAACA CGGATATTCG AATGGCATCG GCTTCCACGC GTCGCCAGAA
CAGGCGCCGA CGGGCAAGCG AATTCCGTGG GGGAACCAGG CCGAGAAGAA GCGGTCATCG
ATGCTGCGCA ATTCCGCTAA AGGCCATATC TGGCAATTCG GTGTGACTGC CATGCCAGCT
TTCTGGCCAT TCTGGCACTT CAAGCTGAAG TCGAGGGTCC TGTTTGCGCA AGATAACGGC
ACCCCAGCCG GCCTTGTTGT CGACGATCCC AAGAAGCGAC ACCGCTTGAG GCGATCGGTG
TGTAAGGGAT GGCGCAACAA GCAGTGGTAC GGGCGCCTTC TCGCGTTTCT AGAATTGCTT
TCCGGAGAAT CGGCTTTTGT GCGCCTCCCT CTTTCCGAGA CGGAAACCTT CGTTCTCGAG
GCCTCGCCGA TGCTGTTCTC ATCTCCGGTC AGTACCGTTC TTCCAAACGA CCTCGATGAT
GAGGACGAGG AGCTGGATGA AAGCACTCTC GGGCGGCCTG ACAGTGATGA GGAGGGCGGC
GAATGA
 
Protein sequence
MKFDFSTLSP DDFENLSRDL VGAETGVRFE AFTVGADEGM DGRHAKADGS IILQAKHYLR 
SGFSKLKSKM REERVSIDEL APQRYILTTS VPLTPANKAT LSEIIGPSLA GPGDIFGADD
LNGLLRSYPE VVKAHEGLWA HSTPVLEEVV TNAVRKAMAP AEVPKTLARL MPPLGAATDA
QIEPVKRDTI FIIKASPSDD EFTLWLAPKL EAEGYQVFAD VLTLMPGERW RREITSALRH
RAVKVLLLCR DSSLGDSSIQ DDLDIALETG KELGDQRFVI PLRMETFRKI KGLGDTVAVD
FVRNWGEGLL KLIDTLQRQK VPRSVDTMIN PYWEIYRRRG AVPIIDVPER LTSNWLLVAE
APDFIRYFEC SGAINKGRLQ GAIDSYGHPC ALVGGSGFLA FGGVPEIEMA FEAVGRFKLK
HEIPLVEFTE GGFQRLRIDR QTASNLVVAM LKKAWFNYCK RHGFVEHGYS NGIGFHASPE
QAPTGKRIPW GNQAEKKRSS MLRNSAKGHI WQFGVTAMPA FWPFWHFKLK SRVLFAQDNG
TPAGLVVDDP KKRHRLRRSV CKGWRNKQWY GRLLAFLELL SGESAFVRLP LSETETFVLE
ASPMLFSSPV STVLPNDLDD EDEELDESTL GRPDSDEEGG E