Gene Smed_6457 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_6457 
Symbol 
ID5320760 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009622 
Strand
Start bp105041 
End bp105517 
Gene Length477 bp 
Protein Length158 aa 
Translation table11 
GC content58% 
IMG OID640778022 
ProductAsnC family transcriptional regulator 
Protein accessionYP_001314954 
Protein GI150378360 
COG category[K] Transcription 
COG ID[COG1522] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.545436 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGAGT CTCCCACAGA GGATGTCGAT AGGATAGACC TTAAGATTTT GCGCGCCTTG 
CAATCGGAGG GCCGGCTCAG CAATGCCGAT CTCGCCGAGC GCGTGAATGT CAGTGCTGCA
ACTTGCCACA GGCGAACTCA GCGCCTCTTC GAGGAGGGCT ACATTACCGG CGTGCGGGCG
GAAGTCTCGC CGGGGGCCGT AGGCCTCGGC GCGATGGTTA TGGTTGGCGT GGTACTGGAT
CGCTCCACGC CTGAGAGCTT TGGTGCCTTT GAGGGCGCGG TCATGGAGCT GAAGGAAGTA
CTGGACTGCA ATTTGGTCGC CGGAGATTTC GATTATCTCC TGAAAATACG CGTCCGCGAC
ATGGCCGATT TCAACAAGCT ACACGGCCAG AAGCTGATCG CCCTTCCAGG CGTGCGCCAA
ACGCGCACCT TCTTCGTGAT GAAGGAAGTC AAGGAGAACG CGAGGTTGCC CTTCTAG
 
Protein sequence
MKESPTEDVD RIDLKILRAL QSEGRLSNAD LAERVNVSAA TCHRRTQRLF EEGYITGVRA 
EVSPGAVGLG AMVMVGVVLD RSTPESFGAF EGAVMELKEV LDCNLVAGDF DYLLKIRVRD
MADFNKLHGQ KLIALPGVRQ TRTFFVMKEV KENARLPF