Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_6438 |
Symbol | |
ID | 5320741 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009622 |
Strand | + |
Start bp | 91437 |
End bp | 92630 |
Gene Length | 1194 bp |
Protein Length | 397 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640778008 |
Product | polar amino acid ABC transporter, inner membrane subunit |
Protein accession | YP_001314940 |
Protein GI | 150378346 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG4597] ABC-type amino acid transport system, permease component |
TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.856456 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCATTG GCGTCACCAA CGTGCCTGAA CGAAGCAAAT CCTCAGGATC GATCATCAAT GATCCTCAGG TGCGCGGGAT ATTCTATCAG GCAATCACCA TCATCATTCT CGCAGCGCTC ATCTACTGGA TCGTCGATAA CACTGTCGAC AATCTCAGGC GCGCGAATAT CGCGTCCGGC TATGACTTTC TGAGGAGTCG CGCCGGTTTC GACGTCGGGC AGTCGCTGAT TTCATTCACC AGCGATTCCA CCTATGGCCG CGCTTTGCTG GTCGGCTTCA TCAACACATT GCTCGTCGCG ATCACCGGTA TCATCACCGC GACAATCATC GGCTTCCTCG TCGGTATCGG ACGCCTTTCG CACAACTGGA TCATTGCCAA GCTCTCGCTG GCCTATGTGG AGGTGTTCCG CAACATCCCG CCGCTGCTCG TCATATTCTT CTGGTATAGC GGGGTGCTGT CGATATTGCC GCAGGCACGA GATGCACTTG CCCTGCCCTT CGATATCTTT CTGAGCAATC GCGGTGTCGC CTTTCCAAGG CCGGTTGCCG GAGAGGGTGC CGAATACACG CTCCTCGCGT TTATCATCGC AATAGCTGCA AGCGTGTTCT TTACCCGCTA CGCGCGCCAA CGGCAGTTGG CGACCGGCGA GCGGCTTCCC GTCCTGTGGA CCGTTCTTGG ATTGATCATC GGTCTGCCGC TGATCACATT CCTCGTAACC GGTGCGCCGA TCGGCTTCGA CGTTCCGGTG GCAGGCAAGT TCAACCTTAC CGGCGGTTCG GTCGTCGGAC CGGAATTCAT GTCGCTGTTC CTGGCGCTCT CATTCTATAC GGCAGCCTTC ATCGCCGAGA TCGTCAGGGC GGGTATCCGC GGTGTCTCAA AAGGACAGAC GGAGGCGGCA CATGCACTTG GCATACGCCC ATCGCTGACG ACCCGCCTGG TGGTCGTGCC GCAGGCGATG CGCATCATCA TTCCGCCGCT GACCAGCCAA TATCTCAACC TCACCAAGAA CTCCTCCCTG GCGGTCGCAA TCGGCTATGC CGACCTCGTG GCCGTCGGCG GCACCATTCT CAACCAGACC GGACAATCGA TCGAGGTCGT AAGCATCTGG CTCATCGTCT ATCTCAGCCT GAGCCTCGCG ACGTCGCTGT TCATGAACTG GTACAACGCC CGCATGGCGC TGGTGGAGAG GTGA
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Protein sequence | MAIGVTNVPE RSKSSGSIIN DPQVRGIFYQ AITIIILAAL IYWIVDNTVD NLRRANIASG YDFLRSRAGF DVGQSLISFT SDSTYGRALL VGFINTLLVA ITGIITATII GFLVGIGRLS HNWIIAKLSL AYVEVFRNIP PLLVIFFWYS GVLSILPQAR DALALPFDIF LSNRGVAFPR PVAGEGAEYT LLAFIIAIAA SVFFTRYARQ RQLATGERLP VLWTVLGLII GLPLITFLVT GAPIGFDVPV AGKFNLTGGS VVGPEFMSLF LALSFYTAAF IAEIVRAGIR GVSKGQTEAA HALGIRPSLT TRLVVVPQAM RIIIPPLTSQ YLNLTKNSSL AVAIGYADLV AVGGTILNQT GQSIEVVSIW LIVYLSLSLA TSLFMNWYNA RMALVER
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