| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_6408 |
|---|
| Symbol | |
|---|
| ID | 5320711 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009622 |
|---|
| Strand | - |
|---|
| Start bp | 68678 |
|---|
| End bp | 69439 |
|---|
| Gene Length | 762 bp |
|---|
| Protein Length | 253 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640777988 |
|---|
| Product | lytic transglycosylase catalytic |
|---|
| Protein accession | YP_001314920 |
|---|
| Protein GI | 150378326 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCTAGGCG CTGATGGCGT TGTGAAGCAG GAAAATGCGG TTCAGAACAA AGCTGACAAA
AGCCCCCATG ATTTTGGAGG TTTGAACCAT ATTGATGCAA TCTTGAGCAA TTTTGCTCCG
TCGAACGACG TGCCGAACAG GGTTGATGAA CCGCAAGGTC CCACGGGCTC GATACAGCAA
ATCGATGCGG CTCGGCAGAT CGATAACAAC ACCAAGGACG TGTATGAGTG CGGTCCGTCT
CCGCACAGCC CGGAAGAGGT TAAGTCTCTG GTTGTGCAGA CGGCGCGCAA ATATCGCGTC
GATGAAGTCT TCGCGACGGC CATCGCCTGG GCGGAGAGCG GCTTTGACCA AAGCCGCAAT
TCCCCAAAGG GCGCGCGCGG ACCGATGCAG CTCATGCCTG CGACGGCTGC GCGGTTCGGA
GTTACGGACA TCTGTGATCC CACTGAGAAT ATCGAGGGCG GGATGAAGTA TCTGCGCTTT
CTGCTTGATG AGTTTCAGAA CCCGCTCCTG GTCGCGGCTG CGTACAACAG CGGCGAACAG
CGGATCTACC AACACGGCGG CATCCCGCCG TTCCAGGAAA CAGTCGGATA CGTCGCCAAG
GTGGTGAACT ACCAACTCGG ACTGCCAATG CCGTCGGCAA AAGGCAAGGC GAGGCCGGCC
GCCGCTCCGC AGGCGGTCTC GGATGCGAGT GACAGCGGCG ACGCCGGGGT CATCGCCGTG
AAGAAGACCG GCAAGTTTGT CGGCGGTGTC ATGCACTTTT GA
|
|---|
| Protein sequence | MLGADGVVKQ ENAVQNKADK SPHDFGGLNH IDAILSNFAP SNDVPNRVDE PQGPTGSIQQ
IDAARQIDNN TKDVYECGPS PHSPEEVKSL VVQTARKYRV DEVFATAIAW AESGFDQSRN
SPKGARGPMQ LMPATAARFG VTDICDPTEN IEGGMKYLRF LLDEFQNPLL VAAAYNSGEQ
RIYQHGGIPP FQETVGYVAK VVNYQLGLPM PSAKGKARPA AAPQAVSDAS DSGDAGVIAV
KKTGKFVGGV MHF
|
|---|
| |