| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_6405 |
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| Symbol | |
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| ID | 5320708 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009622 |
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| Strand | - |
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| Start bp | 65563 |
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| End bp | 68022 |
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| Gene Length | 2460 bp |
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| Protein Length | 819 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640777985 |
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| Product | type IV secretion/conjugal transfer ATPase |
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| Protein accession | YP_001314917 |
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| Protein GI | 150378323 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0682909 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGAAAG TCGTCAAAGA AGAGCTTGGA TTCGGCCGGG TCGCCGGCAA TGAGCGGCCC
ATGTCGACTC ATATTCCATA TCTCCGACAC GTCTCCGACA CAGTGATCGG GCTGGAAAAC
GGATCGCTTC TAAGCATCAT CAAACTCGAT GGACTGTTCT TCCAGACGGA GGACCAGGCT
GAGCTCAACA TGCGGTCGGT CGTCCAGAAC ACGATGATCC GTGCCTTGGG GTCGAGCCGC
TATTCTCTTT GGTCGACCGT GATCCGGAGA GAGGTCGAAA CGCAGATAGG TGGCGCGTTC
GACGAACCAT TCTGCGACCT GTTGAACAAG CGCTACATGG GGCAACTGCG CCATAAGCGC
ATGTTCACAA ACGAAATATA CTTGACGGTC GTGCGGTCTG GGATGCGGGG CGCCCTCGGC
ATTGGCGACT CGTTGAAGAG GCTCTTTGAC AAGGCAAACA GGGACGTTCG GATCCAGCAA
ACGCGCGAAG ATGTTACCGA GCTCGAGGAG CTGATCGGCA ACATCGTCCG CGATCTGCAC
AAGTATGGAG CCCGGGCGCT CGGAATTACC TATCGTCGCA GGAATGACGA CGAGGCCAAG
ATTGAAGGGC GTGAAGAGAA CGAGAAAGGC GAGCCCTACT CCGAACCCTG CGAGTTCTTC
AATGCGATCC TGAGCTGCGG TGTGCCGCGC AAGATGCGCC TGCCCCGCAT GGGCATTCGC
AATTTTGTTG GAACGTCGCG GCTGCATTTC AGCAAGCGGA CGATGCAAGC TCAAGCGGCT
GTCGATGAAG ACACCCGCTT TGGGGCGCTG CTGTCCATCA AGGAATATCC GCCCTTCACC
GGGCCGGGAA TGCTGGACGG CCTGCTACAG GTGAACCACG AATTCATTCT GACGCAATCC
TTCACCATCG CCGACAAGCC GATCGCTCAA GAACGTATTA GTCGATTGCA GAGGCAGATC
AGAGCCTCGG ACGAGTCCGG TAGCTCAGTT GAACAGGATA TCGACTATGC GCTCAATAGC
CTGATGAACC AGGAAGCCGT CTTCGGTTTC CACCATCTTT CGCTCCTATG CCTCTCCCGC
GATCTCCCGG GCCTTAGCCG CACCGTTTCC GAACTCGGTG CTTGCCTCAC CGACATGAAT
CTCACCTGGC TTCGCGAGGA TCTGAACCTC GAAGCGGGAT TTTGGGCGCA ACTGCCCGGC
AATCACAGCT ACATTGCTCG CAAAGCGATG TTGTCGAGCG CGAATTTTTC CGGCCTGTCC
TCCATGCACA ATTTCGCGAC GGGCCAGGCC GATCGCACTC ATTGGGGACT GCCGATCACG
ATCCTCGAAA CCACGTCGCA GACGCCGTAC TGGTTCAACT TCCATCGCCG CGACATCGGG
CACTTCCTCG TCACAGGACC AACCGGCTCC GGTAAAACGG TCGCTTTGAC CTTCCTGCTC
GCACAGGCGA TGCGCGTTTC ACCGACGCCG AAAGCCGTGT TCTTCGACAA GGATCGCGGC
GCGGAAATCT TCGTAAGGGC GATTGGCGGT TCATATGAGG TGCTGTCACC GGGAACGCCG
ACCGGCTTTA ACCCGCTGCA GCTCGAAAAT ACCGGCCCAA ACCGCGAATT CCTCCTTCGC
CTCTTGAAGG CAATGCTGCG CTCCGGTGAT CGCGGTGACT TCACTCAGGA AGATGAGGAT
ACGCTTGAGC GGGCGATCGT CCGCCTGATG CAGGAACCTG CGGCGGAACG AAACCTAGCG
AATCTGGCCG CCCTGCTTGT GGGTCGGTCG CGGGCGGATG CCAATGACCT TCACTCTCGC
CTTCGTCCTT GGATCGAAGG TGAAAAGGCG TGGCTCTTCA ACGCTCAGCA CGACGTGCTC
TCTTTCTCGG GTCGCAGCGT CTTCGGGTTC GACATGACGA ACATCCTCGG CAACGAGGAT
CTCCGCACGC CCGCGCTGAT GTACCTCTAT CATCGCCTCG ACGAGCTGCT CGACGGAAAC
CCGGTCATGT TCTTCATGGA CGAGGGCTGG CAGCTTCTTA TGGACGAGAC CTTTTCGGCG
TTCATCGTCG ACAAGATGAA AACCATCCGC AAGCTCAACG GCATTGTTGG CTTCGGCACC
CAGTCCGCGG CGGATATCGC CAAGGCAAAA GCCTCGCATA CGCTGATCGA GCAGTCGGCG
ACGAACATTC ACTTTCCGAA CCCGCGGGCC GACGAAGAGA GCTACATCAA GCGCTTTGGC
CTGACGGTGA AAGAATTCAA CTTCATCAAG AACACTCCGC CCGAAAAACG AACTTTCCTG
ATCAAGCACG GCAATGACTC GGTCATCGCT CGGCTGGATC TTTCCGCCAT GCCCGATCTC
GTGAAGGTGC TTTCCGGCCG CAAGGAGACC GTCGAGGAGT GCGCGGCACT TCGGGAACAA
TACGGCGACG AGCCTGAAAA TTGGCTGGCT GAATTCTGCG GATGGGAGAA GGCCGAATGA
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| Protein sequence | MLKVVKEELG FGRVAGNERP MSTHIPYLRH VSDTVIGLEN GSLLSIIKLD GLFFQTEDQA
ELNMRSVVQN TMIRALGSSR YSLWSTVIRR EVETQIGGAF DEPFCDLLNK RYMGQLRHKR
MFTNEIYLTV VRSGMRGALG IGDSLKRLFD KANRDVRIQQ TREDVTELEE LIGNIVRDLH
KYGARALGIT YRRRNDDEAK IEGREENEKG EPYSEPCEFF NAILSCGVPR KMRLPRMGIR
NFVGTSRLHF SKRTMQAQAA VDEDTRFGAL LSIKEYPPFT GPGMLDGLLQ VNHEFILTQS
FTIADKPIAQ ERISRLQRQI RASDESGSSV EQDIDYALNS LMNQEAVFGF HHLSLLCLSR
DLPGLSRTVS ELGACLTDMN LTWLREDLNL EAGFWAQLPG NHSYIARKAM LSSANFSGLS
SMHNFATGQA DRTHWGLPIT ILETTSQTPY WFNFHRRDIG HFLVTGPTGS GKTVALTFLL
AQAMRVSPTP KAVFFDKDRG AEIFVRAIGG SYEVLSPGTP TGFNPLQLEN TGPNREFLLR
LLKAMLRSGD RGDFTQEDED TLERAIVRLM QEPAAERNLA NLAALLVGRS RADANDLHSR
LRPWIEGEKA WLFNAQHDVL SFSGRSVFGF DMTNILGNED LRTPALMYLY HRLDELLDGN
PVMFFMDEGW QLLMDETFSA FIVDKMKTIR KLNGIVGFGT QSAADIAKAK ASHTLIEQSA
TNIHFPNPRA DEESYIKRFG LTVKEFNFIK NTPPEKRTFL IKHGNDSVIA RLDLSAMPDL
VKVLSGRKET VEECAALREQ YGDEPENWLA EFCGWEKAE
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