| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_6404 |
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| Symbol | |
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| ID | 5320707 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009622 |
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| Strand | - |
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| Start bp | 64478 |
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| End bp | 65566 |
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| Gene Length | 1089 bp |
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| Protein Length | 362 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640777984 |
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| Product | lytic transglycosylase catalytic |
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| Protein accession | YP_001314916 |
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| Protein GI | 150378322 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0649822 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGGATGA GTCCTGCTTT GTGGGTGATT TCTGCGCTGT GGCTTGGTGC CTCCGGAACG
GCGCACTCTC AGGTGCCGGT GCTTGACGGC AAGGTGCTCG AGACCGACAC CAAACGCGAC
CAGACGACGA CGGAAATCGA AAAGACGGAT AGCGACCGTC ATACGGTCAG CAAGAGCGTG
ACCTGCTCGA TGTATCGTCC AGGTCGCAGC GGTGACGCCG CTTCCGCTGC AACGGCCAAC
CCGGAAATCA CCGGGCTTGT AAAGCGAGTG GCCCAGGAAG AAGGCGTCGA CGAAAGCCTC
TTCATGGCGC TCGTCTATCA GGAAAGCCGG TTCAATCCGT GTGCGAAATC GCCGGTCGGC
GCCATTGGGC TTTCTCAGCT CATGCCGGGT ACGGCAAAGG ATCTGGGGGT CAATCCTTAT
GACATGGAAG ACAATCTTCG TGGCGGCGCG CGCTATCTGA AGCAACAGCT CCGGCGCTTC
AACGGCAACA CCAATCTCGC TCTGGCCGCC TATAACGCGG GTCCTGGTAA CGTCCAGAAG
TGGGGCGGAA TCCCACCTTT CAAGGAAACG CAGGGGTATG TGGCGAATAT CACCCAAAAG
TGGCTTCCTG CTTTTGGCGG CTCCGACGTC GCGAATATTC CTGCGAACTA TGGCGGCGGT
TCTACAGCCT TCACCGGCAT GCGGGATTCC ACCATCAACT CAATGGCGAC ATCCCAAGCG
ATTGGGGAAA GCAGCGGACA CGTTGCCTCT TGGCTGCAGC AGTTGGGCGC AATGTCCAGC
GGGACGATCC AAGACAGTTG GGATCACAAT TCCGGCGCGC GAAATGCCAA TCTCGAAATG
ATGAACCAGG TCATCCGCCT CGGCACGACG ATGGCGGACC TTATGAATTC TCGTAGTGCG
GTCGATATCG GCAATCTTTC CGGCGCATCG CGCACGGGCG ACTTCAAGAA TGATGACGAC
GGCGCGGATC GCGAAACGAC CGGTGTTTGC GATCCTCGCG AGGGGCTTGA ATGGAGCCCG
ACAGAAAAGG CTTGCGTCCA GAAGCGGGAG CGCGAAGCCA ACGTAGATCT GATGTTGACC
GCTCAATGA
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| Protein sequence | MRMSPALWVI SALWLGASGT AHSQVPVLDG KVLETDTKRD QTTTEIEKTD SDRHTVSKSV
TCSMYRPGRS GDAASAATAN PEITGLVKRV AQEEGVDESL FMALVYQESR FNPCAKSPVG
AIGLSQLMPG TAKDLGVNPY DMEDNLRGGA RYLKQQLRRF NGNTNLALAA YNAGPGNVQK
WGGIPPFKET QGYVANITQK WLPAFGGSDV ANIPANYGGG STAFTGMRDS TINSMATSQA
IGESSGHVAS WLQQLGAMSS GTIQDSWDHN SGARNANLEM MNQVIRLGTT MADLMNSRSA
VDIGNLSGAS RTGDFKNDDD GADRETTGVC DPREGLEWSP TEKACVQKRE REANVDLMLT
AQ
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