| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_6401 |
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| Symbol | |
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| ID | 5320704 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009622 |
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| Strand | - |
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| Start bp | 62504 |
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| End bp | 63532 |
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| Gene Length | 1029 bp |
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| Protein Length | 342 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640777981 |
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| Product | TrbL/VirB6 plasmid conjugal transfer protein |
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| Protein accession | YP_001314913 |
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| Protein GI | 150378319 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3704] Type IV secretory pathway, VirB6 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACGATT TTCTAGGCGA TCTGCTGGAC AGAATTGAAC AGACCGGCGC GAATTTTTCT
TCCCGGGCCT ACGGGATCGT CGGCGATGAG ATCGTGCCAC TGCTCACCAT CATGTTCATT
GCATATGTGG GCTACTACGG ACTCCAGCTT TTCATGGGAA CGGCCCGCGT CAGCGTCAGC
GAGATCGTTG GTCGCGTCGC CCGGATGTTG ATCATTCTGG CGCTGGTCAG AGAGTGGGAC
TACTTCAACA CTCTTTTCTA TTCCTGGCTG AATAACACGC CAGAGGACGT CGGCCGGGCG
ATCCTTACCG CCACCGGGAC AGGCATCACA GAGCCGACAA ACGGCCTTTC GATGATCTGG
AAAACGGCCA ATGAGGCTGC TTCTGCCTTC GCAGAACAGT CTGGTTATTT TGCCGTGCTG
CCGTCCATGA TCGGTTTTTT GATCATGTTT GCAGTGGCGG TCTTCATTGC AGTGGCTCTG
GCGATCCTGC TCCTCGCCAA GGTGATGATG TGGGTGCTGA TCGGGACCGC ACCGATCTTC
ATCGGCTGCA TGCTCTTCCA ACAGACAAGA GGCATGGGCG TCGCCTGGTT CCAGCAGGTG
CTGATGTATG CTCTGATCCC ACTATTCGTC TACGTCGTGG CTGCATTCCT GATCTCAGCG
ATGGACCCGG AACTGACAAA GGTCACGAGC GCTGCAAACC AACGGGAACT TCAGCTTAGC
GACATTTCCG CTTTCCTGCT CCTGTGCGCC GCAGGCGCAT TTGTCCTCTT CAACATTCAG
GTTCTCGCGC AGGGCATTAC CGGTGGCGTG GCCGCCGGCA TCGGCAATTT CGCACGTGCC
GTTGGCCGAT GGGCAGGCGT ATCGGCACCA ATATCCGCCC TGTCAGGCGG ACAACGTCTG
GCGGGGTCAA TTGGCAATGC CGGGATGCAA GCGAGGGCAC GTACCCAGGA AGGCATGAGA
ACCAACATTC GCAACGCCGC TGCTCAGGCG ATGCAGAACC GCATTAGCAG CAACAGCATG
CCTCGCTGA
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| Protein sequence | MHDFLGDLLD RIEQTGANFS SRAYGIVGDE IVPLLTIMFI AYVGYYGLQL FMGTARVSVS
EIVGRVARML IILALVREWD YFNTLFYSWL NNTPEDVGRA ILTATGTGIT EPTNGLSMIW
KTANEAASAF AEQSGYFAVL PSMIGFLIMF AVAVFIAVAL AILLLAKVMM WVLIGTAPIF
IGCMLFQQTR GMGVAWFQQV LMYALIPLFV YVVAAFLISA MDPELTKVTS AANQRELQLS
DISAFLLLCA AGAFVLFNIQ VLAQGITGGV AAGIGNFARA VGRWAGVSAP ISALSGGQRL
AGSIGNAGMQ ARARTQEGMR TNIRNAAAQA MQNRISSNSM PR
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