Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_6400 |
Symbol | |
ID | 5320703 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009622 |
Strand | - |
Start bp | 61783 |
End bp | 62478 |
Gene Length | 696 bp |
Protein Length | 231 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640777980 |
Product | VirB8 family protein |
Protein accession | YP_001314912 |
Protein GI | 150378318 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3736] Type IV secretory pathway, component VirB8 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAGAAA CGAATGACGC AACTCTTCGG AGCTACTTTC AGGACGGTGA TCGCTGGGAA CAGGAGATCG TCAAAAAAGC CAAGCGATCG CGCTCGCTCG CATGGTTCGT CACAATGATT TTCGGCGCGA TCACCCTGCT GTCACTGACA GCATTGGTGA TGCTCGTTCC GCTGAAGAGC TTTGAGCCGT ACATCGTCGA GGTCGATAAA AACACCGGCT ATATGGAGGT GAAGACCAGC CTAACTAGGT CCGCCAAGCT GACCGACCAA CAGGCGGTCA CTCAAGCGAA TGTCGTTCGC TATATCCGAT CTCGCGAAGG CTACGACCCA TTCGCGATTG AGCAGAATTT CGGCATCGCC GCCCTGCTCT CTACTGATGA TGCGGCCCGC GAGCTGCAGG AGCTTTACAG TGCGGCAAAT CCCAACAATC CCGCAAAGGT CCTCGGCAAG AACAAGAAGG TAACCGTCGA CATCAAGTCC GTCACCTTCT CCAATGCGAG CACGGCCTTG GTCCGTTTTT CCACGACCGA AAAATCGGAC ACGGATTCGA TCGTGCGTCA CTACATTTCA GTCGTTCGCT ATCGCTATAC GGATACGCCG GCGACCAACG AATGGCGTTT TGAGAACCCC TTGGGCTTCC AGGTCTACAA CTACCGTCGC GATCAAGAAA CGGTTACGTC GGGAGGCGAG GAATGA
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Protein sequence | MAETNDATLR SYFQDGDRWE QEIVKKAKRS RSLAWFVTMI FGAITLLSLT ALVMLVPLKS FEPYIVEVDK NTGYMEVKTS LTRSAKLTDQ QAVTQANVVR YIRSREGYDP FAIEQNFGIA ALLSTDDAAR ELQELYSAAN PNNPAKVLGK NKKVTVDIKS VTFSNASTAL VRFSTTEKSD TDSIVRHYIS VVRYRYTDTP ATNEWRFENP LGFQVYNYRR DQETVTSGGE E
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