| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_6399 |
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| Symbol | |
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| ID | 5320702 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009622 |
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| Strand | - |
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| Start bp | 60977 |
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| End bp | 61786 |
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| Gene Length | 810 bp |
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| Protein Length | 269 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640777979 |
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| Product | P-type conjugative transfer protein VirB9 |
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| Protein accession | YP_001314911 |
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| Protein GI | 150378317 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3504] Type IV secretory pathway, VirB9 components |
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| TIGRFAM ID | [TIGR02781] P-type conjugative transfer protein VirB9 |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.474869 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCAAAC GCCTCCTGCT TTCCGCGGCC TGCGCGGCCG TGATGATGAC TCACGCCCAT
GCTGCGCAGG CACCTCGCCC GGGCAGCCTC GATTCGCGCG TGACCAGCGT CGTCTATCAG
TCCAATAACG TGGTGAAGGT CTCTGCCACC TACGGCATCT CCACCATGAT CATCTTTGAC
GAGGACGAAA AGTTCGAAAC GATCTCACTT GGCGACACCG ACAGTTGGCA GGTTGCCCCT
TCCGACAAGG GCAACATTCT GTTCGTGAAG CCGATCGCAA AGAACGTCGC CACCAACATG
AATGTTGTGA CCAGCAAGAG GATCTATTTC CTCGAGCTCA ACGACCATGC TCCGTCCGAT
GGCAAGCAGG TGTTCGGGAT CCGTTTCGTC TATCCCGAGA AGGATCTAAA TGCCGCGCTC
CGCAAGGAGG CTGAGTACCG GGCGGCCTAC CCGAACATGT CGAATGTCGA TAAGGCCAAC
GTCAACATCG ACTATTCGTT TTCCGGAGAT CCGGCGTTGA AGCCTTTGGT GATATTCGAC
GACGGGAAAA AGACCTTCTT CAAGTTCGGC AGCCGGGTGC CGGCGATTTT TACCGTCCAG
GCCGACTTTT CCGAGACGCT GCGCAATTTC CGCAAGGAGG GCGAATACAT CGTCGTCGAC
GGTGTCGCGA CGCAATACAC GCTGCGCGAG GGCAATCAAT GGACCTGCAT CTTTAACCTT
CGCAAGCCCG ACTTCGGCGC TCCGAATCCT GCCATTCTCG GTCCGGCTCC TGACACCAAG
GCGACGAAAC GTGGGAGGAG CGGCAACTAA
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| Protein sequence | MIKRLLLSAA CAAVMMTHAH AAQAPRPGSL DSRVTSVVYQ SNNVVKVSAT YGISTMIIFD
EDEKFETISL GDTDSWQVAP SDKGNILFVK PIAKNVATNM NVVTSKRIYF LELNDHAPSD
GKQVFGIRFV YPEKDLNAAL RKEAEYRAAY PNMSNVDKAN VNIDYSFSGD PALKPLVIFD
DGKKTFFKFG SRVPAIFTVQ ADFSETLRNF RKEGEYIVVD GVATQYTLRE GNQWTCIFNL
RKPDFGAPNP AILGPAPDTK ATKRGRSGN
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