Gene Smed_6396 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_6396 
Symbol 
ID5320699 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009622 
Strand
Start bp56661 
End bp58760 
Gene Length2100 bp 
Protein Length699 aa 
Translation table11 
GC content58% 
IMG OID640777976 
ProductTRAG family protein 
Protein accessionYP_001314908 
Protein GI150378314 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3505] Type IV secretory pathway, VirD4 components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.969912 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGAAGC AGCTTCAGGC GTTCTACCTG CTCTTTTGCG TCGGGATAGC ATTCGTTGTC 
TGGATGCTCG GGTACGGCCT GGGGCTTCAG CTCTTCTATA GGGACGGTCG GATCCTCGAA
ACGACAATCA CGAGCAATCC TTTCGCTCCG ATTCAACAGT TCTGGCATTA CAAAACGAGC
CCGGCCCTGC AGAAGGTCGC GCTTGGTTCG ATGCTGCCGG CGCTGCTGGC GGCGGGCCTT
GTCGCCTGCA TCGGATTGAA GCCGACGAGC AGCCCATTGG GGGATGCCGC GTTTCAGGAC
CTGGCTTCGC TACGGCGCAG GAAGTGGTTC CGCAAACAGG GACACATCTT CGGCCGGGTC
GGGCGGAACA TACTCCGCAC CAAGGACGAT CGGCATCATC TGATCATAGG CCCGACGCGC
TCCGGTAAGG GTGCGGGCTA TGTGATCCCC AATGCGCTGA TGCATGAAGG CTCGATGATC
GTTACCGATC TCAAGGGCGA AGTGTTCAAG GCGACGGCGG GTTATCGCCG CCAGAACGGC
AGCCAAGTCT TCCTATTCGC GCCTGGCTCC GAAAAGACCA ACAGCTATAA CCCGCTGGAC
TTTATCCGGC CGGAGCGCGG CAATCGCACG ACCGACATTC AAAACATCGC CAGCATTCTT
GTGCCCGAGA ACACAGAATC GGAAAATTCC GTCTGGCAAG CGACCGCCCA ACAGGTACTT
GCAGGCGTGA TCAGCTACAT CACGGAAAGC CCCTTCTACA AAGACCGGCG CAACCTCGCC
GAGGTCAATT CCTTTTTTAA CAGCGGCGTC GATCTCCAGG CGCTCATGAA ATACATCAAG
GAAAAAGAGC CGTACCTTTC GAAGTTCACC GTCGAGAGCT TCAATTCCTA CGTCGCCCTA
TCGGAACGCG CGGCCGCGTC TGCTCTCTTG GACATTCAAA AGGCGATGCG GCCTTTCAAG
AACGAGCGGA TCGTTGCCGC GACCAATGTC ACCGACATGG ATCTTCGCGC AATGAAGCGC
CGGCCGATCT CGATCTACCT GGCGCCGAAC ATCACCGACA TCACCCTGCT GCGCCCTCTC
CTCACCCTGT TTGTGCAGCA GGTGATGAAT ATCCTCACAC TCGAGCACGA TCCAAATTCC
CTCCCCGTCT ACTTCCTGCT CGACGAGTTC CGGCAGTTGA AGCGGATGGA CGAGATCATG
ACCAAGCTGC CCTATGTGGC TGGCTATAAC ATCAAGCTCG CCTTCATCAT TCAGGATCTG
AAGAACCTCG ACGAGATCTA CGGCGAAACC TCCCGGCATT CGCTGCTCGG CAATTGTGGG
TATCAGCTCG TCCTCGGTGC CAACGACCAG GCCACAGCCG AGTACGTATC CCGCGCGCTC
GGAAAGCGCA CGATCCGCTA CCAGTCCGAA TCTCGCACGA TCGAACTGAT GGGCCTGCCT
CGCCGCACGA AGGTAGAGCA GATTCGCGAA CGCGATCTGA TGATGCCGCA GGAGGTCCGG
CAAATGCCGG AGAACAAGAT GATCCTGCTC ATCGAAGGAC AACGCCCGAT CTTCGGTGAA
AAGCTTCGCT TCTTCCAAAC ACAGCCCTTC AAATCAGCCG AGGCGTTTTC TCAGGCCAAC
ATTCCGCAAG TGCCGGAAGT CGATTATCTG TCACCGAAGC CCGTGCCGGC GACAACTCCG
GAATATGCCA GTGGCGGAGA TCCTTCCGTC GAAATTCCCT CGCCGGCGCC AGCGAAGGAG
GAGAAGCCTT TGACGGCCGC CGCGGCGGAG GCAGCTCCGG TCATGGCAGA ACCTGCGGCA
GGCGAGAAAG CTGCAGCACC TGCCAAACGC GCCGTCAATA GAAAGGCGCT GCGCACGAAT
CCTAAGGCGA CTGCTGCAAA CACTGGTGGT GCGGAAGCAT CTGCAAGCCT CGATGCAATG
GAGGCCCGGA TAAAGGCCAT CGAGGAAGGC CTTAAGCCAA AGGCCGCGCA GCTCAAGGAA
GTGGTCGAGA CGAAAGCTGA GAAGCTTGGC GGCAAGTCTC CGACCAAGCG TCGCAACATC
CTGGACATCT TCAGCGCGAC CGTGCCTGAC CCCGTCGAAG TCGGCGTGAC GGCCGAATAG
 
Protein sequence
MTKQLQAFYL LFCVGIAFVV WMLGYGLGLQ LFYRDGRILE TTITSNPFAP IQQFWHYKTS 
PALQKVALGS MLPALLAAGL VACIGLKPTS SPLGDAAFQD LASLRRRKWF RKQGHIFGRV
GRNILRTKDD RHHLIIGPTR SGKGAGYVIP NALMHEGSMI VTDLKGEVFK ATAGYRRQNG
SQVFLFAPGS EKTNSYNPLD FIRPERGNRT TDIQNIASIL VPENTESENS VWQATAQQVL
AGVISYITES PFYKDRRNLA EVNSFFNSGV DLQALMKYIK EKEPYLSKFT VESFNSYVAL
SERAAASALL DIQKAMRPFK NERIVAATNV TDMDLRAMKR RPISIYLAPN ITDITLLRPL
LTLFVQQVMN ILTLEHDPNS LPVYFLLDEF RQLKRMDEIM TKLPYVAGYN IKLAFIIQDL
KNLDEIYGET SRHSLLGNCG YQLVLGANDQ ATAEYVSRAL GKRTIRYQSE SRTIELMGLP
RRTKVEQIRE RDLMMPQEVR QMPENKMILL IEGQRPIFGE KLRFFQTQPF KSAEAFSQAN
IPQVPEVDYL SPKPVPATTP EYASGGDPSV EIPSPAPAKE EKPLTAAAAE AAPVMAEPAA
GEKAAAPAKR AVNRKALRTN PKATAANTGG AEASASLDAM EARIKAIEEG LKPKAAQLKE
VVETKAEKLG GKSPTKRRNI LDIFSATVPD PVEVGVTAE