Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_6396 |
Symbol | |
ID | 5320699 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009622 |
Strand | - |
Start bp | 56661 |
End bp | 58760 |
Gene Length | 2100 bp |
Protein Length | 699 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640777976 |
Product | TRAG family protein |
Protein accession | YP_001314908 |
Protein GI | 150378314 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.969912 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGAAGC AGCTTCAGGC GTTCTACCTG CTCTTTTGCG TCGGGATAGC ATTCGTTGTC TGGATGCTCG GGTACGGCCT GGGGCTTCAG CTCTTCTATA GGGACGGTCG GATCCTCGAA ACGACAATCA CGAGCAATCC TTTCGCTCCG ATTCAACAGT TCTGGCATTA CAAAACGAGC CCGGCCCTGC AGAAGGTCGC GCTTGGTTCG ATGCTGCCGG CGCTGCTGGC GGCGGGCCTT GTCGCCTGCA TCGGATTGAA GCCGACGAGC AGCCCATTGG GGGATGCCGC GTTTCAGGAC CTGGCTTCGC TACGGCGCAG GAAGTGGTTC CGCAAACAGG GACACATCTT CGGCCGGGTC GGGCGGAACA TACTCCGCAC CAAGGACGAT CGGCATCATC TGATCATAGG CCCGACGCGC TCCGGTAAGG GTGCGGGCTA TGTGATCCCC AATGCGCTGA TGCATGAAGG CTCGATGATC GTTACCGATC TCAAGGGCGA AGTGTTCAAG GCGACGGCGG GTTATCGCCG CCAGAACGGC AGCCAAGTCT TCCTATTCGC GCCTGGCTCC GAAAAGACCA ACAGCTATAA CCCGCTGGAC TTTATCCGGC CGGAGCGCGG CAATCGCACG ACCGACATTC AAAACATCGC CAGCATTCTT GTGCCCGAGA ACACAGAATC GGAAAATTCC GTCTGGCAAG CGACCGCCCA ACAGGTACTT GCAGGCGTGA TCAGCTACAT CACGGAAAGC CCCTTCTACA AAGACCGGCG CAACCTCGCC GAGGTCAATT CCTTTTTTAA CAGCGGCGTC GATCTCCAGG CGCTCATGAA ATACATCAAG GAAAAAGAGC CGTACCTTTC GAAGTTCACC GTCGAGAGCT TCAATTCCTA CGTCGCCCTA TCGGAACGCG CGGCCGCGTC TGCTCTCTTG GACATTCAAA AGGCGATGCG GCCTTTCAAG AACGAGCGGA TCGTTGCCGC GACCAATGTC ACCGACATGG ATCTTCGCGC AATGAAGCGC CGGCCGATCT CGATCTACCT GGCGCCGAAC ATCACCGACA TCACCCTGCT GCGCCCTCTC CTCACCCTGT TTGTGCAGCA GGTGATGAAT ATCCTCACAC TCGAGCACGA TCCAAATTCC CTCCCCGTCT ACTTCCTGCT CGACGAGTTC CGGCAGTTGA AGCGGATGGA CGAGATCATG ACCAAGCTGC CCTATGTGGC TGGCTATAAC ATCAAGCTCG CCTTCATCAT TCAGGATCTG AAGAACCTCG ACGAGATCTA CGGCGAAACC TCCCGGCATT CGCTGCTCGG CAATTGTGGG TATCAGCTCG TCCTCGGTGC CAACGACCAG GCCACAGCCG AGTACGTATC CCGCGCGCTC GGAAAGCGCA CGATCCGCTA CCAGTCCGAA TCTCGCACGA TCGAACTGAT GGGCCTGCCT CGCCGCACGA AGGTAGAGCA GATTCGCGAA CGCGATCTGA TGATGCCGCA GGAGGTCCGG CAAATGCCGG AGAACAAGAT GATCCTGCTC ATCGAAGGAC AACGCCCGAT CTTCGGTGAA AAGCTTCGCT TCTTCCAAAC ACAGCCCTTC AAATCAGCCG AGGCGTTTTC TCAGGCCAAC ATTCCGCAAG TGCCGGAAGT CGATTATCTG TCACCGAAGC CCGTGCCGGC GACAACTCCG GAATATGCCA GTGGCGGAGA TCCTTCCGTC GAAATTCCCT CGCCGGCGCC AGCGAAGGAG GAGAAGCCTT TGACGGCCGC CGCGGCGGAG GCAGCTCCGG TCATGGCAGA ACCTGCGGCA GGCGAGAAAG CTGCAGCACC TGCCAAACGC GCCGTCAATA GAAAGGCGCT GCGCACGAAT CCTAAGGCGA CTGCTGCAAA CACTGGTGGT GCGGAAGCAT CTGCAAGCCT CGATGCAATG GAGGCCCGGA TAAAGGCCAT CGAGGAAGGC CTTAAGCCAA AGGCCGCGCA GCTCAAGGAA GTGGTCGAGA CGAAAGCTGA GAAGCTTGGC GGCAAGTCTC CGACCAAGCG TCGCAACATC CTGGACATCT TCAGCGCGAC CGTGCCTGAC CCCGTCGAAG TCGGCGTGAC GGCCGAATAG
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Protein sequence | MTKQLQAFYL LFCVGIAFVV WMLGYGLGLQ LFYRDGRILE TTITSNPFAP IQQFWHYKTS PALQKVALGS MLPALLAAGL VACIGLKPTS SPLGDAAFQD LASLRRRKWF RKQGHIFGRV GRNILRTKDD RHHLIIGPTR SGKGAGYVIP NALMHEGSMI VTDLKGEVFK ATAGYRRQNG SQVFLFAPGS EKTNSYNPLD FIRPERGNRT TDIQNIASIL VPENTESENS VWQATAQQVL AGVISYITES PFYKDRRNLA EVNSFFNSGV DLQALMKYIK EKEPYLSKFT VESFNSYVAL SERAAASALL DIQKAMRPFK NERIVAATNV TDMDLRAMKR RPISIYLAPN ITDITLLRPL LTLFVQQVMN ILTLEHDPNS LPVYFLLDEF RQLKRMDEIM TKLPYVAGYN IKLAFIIQDL KNLDEIYGET SRHSLLGNCG YQLVLGANDQ ATAEYVSRAL GKRTIRYQSE SRTIELMGLP RRTKVEQIRE RDLMMPQEVR QMPENKMILL IEGQRPIFGE KLRFFQTQPF KSAEAFSQAN IPQVPEVDYL SPKPVPATTP EYASGGDPSV EIPSPAPAKE EKPLTAAAAE AAPVMAEPAA GEKAAAPAKR AVNRKALRTN PKATAANTGG AEASASLDAM EARIKAIEEG LKPKAAQLKE VVETKAEKLG GKSPTKRRNI LDIFSATVPD PVEVGVTAE
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