Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_6318 |
Symbol | |
ID | 5320620 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009621 |
Strand | + |
Start bp | 1233716 |
End bp | 1234606 |
Gene Length | 891 bp |
Protein Length | 296 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640777916 |
Product | LysR family transcriptional regulator |
Protein accession | YP_001314848 |
Protein GI | 150378253 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.149291 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAGCACA GACTGCTTCA GTCCTATGTC GCCGTAGCGG AGGAACTGCA TTTCGGCCGG GCGGCAAAAC GGCTCAACAT CTCGCAACCG CCGCTCACCA AGCAAATTCA GCAGTTGGAG CGTGAACTCG GCGTCGCCCT GTTCGAAAGA ACCAAACGGA AGGTGGAGTT GACCGCTGCC GGCTCGGTCC TGCTGGAGGA AGCACGACGC CTGCTGCGGC AGACGGAAAA CGCGGCCGAA CTCGTTCGGA AGACGGAGCG TGGTGAGACG GGACATCTGG CGGTCGGCTT CATCGATGCG GCGATCTATA GCCTGGTGCC CAATGTCGTC GAATGCTTTA CGCGGTCATA CCCGCACGTC ACGGTCGAGC TTGCGGACCT GCGCATCCCG GACCAAGTTC GCGGCGTGAG TGAAGGGCGG CTGGATGTCG GCTTCATCCA CCCACCCATC CGCGGCGAAC AGCTGGCAAT CGAGACGGTC CTCGTCGAGC CGCTGGTGGT CGCTGTGCCA CAGAGACACA GACTTGCGTC CCGCGCCGAA ATCCCGCTGG CGGAGCTGGC AAATGAGGCG CTGATCCAGT TTCCCCGCAG CATCAATCCC ACCCTCTATG ACGAGATCAT CGGACTTTGC CAAAGCTCAG GCTTCAATCC GAAAATCGTT CGGGAAGCAA CGCCCAAGCA GACCATCATC GGCCTCGTTT CGGTCGGCCT TGGCGTATCG CTGCTTCCGA GATGCCTCGA AAACCTGAAG CGCGACGGTG TGGCCTATCG TCCCATTTCG GGGCCGAATC TCTCGATCGA CACGTCGATT ATCTATCGAA GCGACAGGCT AAGACCTGCG ACGAAAGCCT TCATCAATGT CGTTCGCACC GTTGCGCGAG AGGCCGGCTG A
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Protein sequence | MEHRLLQSYV AVAEELHFGR AAKRLNISQP PLTKQIQQLE RELGVALFER TKRKVELTAA GSVLLEEARR LLRQTENAAE LVRKTERGET GHLAVGFIDA AIYSLVPNVV ECFTRSYPHV TVELADLRIP DQVRGVSEGR LDVGFIHPPI RGEQLAIETV LVEPLVVAVP QRHRLASRAE IPLAELANEA LIQFPRSINP TLYDEIIGLC QSSGFNPKIV REATPKQTII GLVSVGLGVS LLPRCLENLK RDGVAYRPIS GPNLSIDTSI IYRSDRLRPA TKAFINVVRT VAREAG
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