| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_6298 |
|---|
| Symbol | |
|---|
| ID | 5320600 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009621 |
|---|
| Strand | + |
|---|
| Start bp | 1214961 |
|---|
| End bp | 1215938 |
|---|
| Gene Length | 978 bp |
|---|
| Protein Length | 325 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640777897 |
|---|
| Product | peptidase U32 |
|---|
| Protein accession | YP_001314829 |
|---|
| Protein GI | 150378234 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0826] Collagenase and related proteases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACTGA TCTGCCCGGC GGGGACTCCT GCCGCTTTCC GCGAGGCCGT CGATGCCGGG
GCCGACGCGG TCTATTGCGG CTTCCGCGAC GAGACCAATG CGCGAAATTT CCCCGGTCTC
AACTTCTCGC GCGAGGAACT CGGCGATGCC ATCGCCTATG CCCGTCGGAG AGGCGCTCAG
ACCTTCGTCG CGCTCAACAC CTTCATGCGC GCCGGACATG AAGGCCTGTG GTACCAGGCC
GCCACGGACG CGGTCCGGCT CGGCGCGGAC GCACTCATCC TTGCCGACTT CGGCCTCATG
GCCCATGTCG CAGAGACCTA CCCCGAGCAG CGGCTCCACG TCTCGGTGCA GGCATCCGCA
TCCAATCCGG ACGCGGTGAA TTTCCTGGTG GAGGCTTTCG GCGCAAGGCG CGTCGTGCTG
CCGCGGACGC TGACGATTTC CGACATTGCC CGGCTCGCCC GTCAGATACG CTGCGAGATC
GAGGTCTTCG TCTTCGGCGG GCTCTGCGTC ATGGCGGAGG GTCGCTGTTC GCTGTCATCC
TACGCCACCG GCAAGTCGCC GAACATGAAC GGCGTCTGCT CCCCGGCAAG CCATGTGCGC
TATCGGCAGG ACCGGGGTGA TCTCGTCTCC GAGCTCGGCG CCTACACGAT CAACCGCTTC
CCCCGTGACG AGGCGGCTGG TTATCCAACG CTCTGCAAGG GGAGGTTCGA CATTGCGGAT
GCCCGCGGCT ACGCCTTCGA GGATCCGGTC TCGCTCGACG TGATGGACCA GATCGACGCC
CTCCGGGAGG CGGGCGTCAG CGCGCTCAAG ATCGAAGGCC GGCAGCGCGG CAAGGCCTAT
GTCGCCGAAG TCGTCTCGAC CCTGCGCAAG GCACTCGCTG CAACCCCGGA AGAGCGCCGC
ACCCTTCTTG CCCGCCTCAG GCTGCTGAGC GAGGGGCAGC GGACGACGTC CGGCGCCTAC
GAAAAACGCT GGAGGTAA
|
|---|
| Protein sequence | MELICPAGTP AAFREAVDAG ADAVYCGFRD ETNARNFPGL NFSREELGDA IAYARRRGAQ
TFVALNTFMR AGHEGLWYQA ATDAVRLGAD ALILADFGLM AHVAETYPEQ RLHVSVQASA
SNPDAVNFLV EAFGARRVVL PRTLTISDIA RLARQIRCEI EVFVFGGLCV MAEGRCSLSS
YATGKSPNMN GVCSPASHVR YRQDRGDLVS ELGAYTINRF PRDEAAGYPT LCKGRFDIAD
ARGYAFEDPV SLDVMDQIDA LREAGVSALK IEGRQRGKAY VAEVVSTLRK ALAATPEERR
TLLARLRLLS EGQRTTSGAY EKRWR
|
|---|
| |