Gene Smed_6286 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_6286 
Symbol 
ID5320588 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009621 
Strand
Start bp1205013 
End bp1206908 
Gene Length1896 bp 
Protein Length631 aa 
Translation table11 
GC content67% 
IMG OID640777885 
Productvon Willebrand factor type A 
Protein accessionYP_001314817 
Protein GI150378222 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG4548] Nitric oxide reductase activation protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.735218 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGGACT TCCTCGAGCT CGAAGAAACG GTCGGCCGCG CCTGGCATCG CTTGATCGGC 
AACACGCGCA CTTGGCCGCG CTTTCCGGAC GAGGCGGTCC GGCTCGGGGA GGTCCAGGCC
GTGTTTGCCG TGTACTTCCG CGGTCTTGGC GGCGAGCGGG CGGTGCAGAT CGCGCCCGCC
CGCGGTCGAA CCTCCGCGCA CCGGCTGCGC TTGCGCCAGC GCATGGGCCT TGGCGAGGAG
AAGCTCGTCC AGCCGGCGCG CGACCATGCG ACGCTGATGC TGCCGGCAGA GGTCGATCTC
TTTCCCTCTC GGCGTCTCAA CCGCGACCTG TATTTCTGGC TGGCGGCGAT GATGGCCGTC
ATGCCACTCA AGCACGTCGG CGCCGCCGAC CCGCTATCGC GCGACTTGGC ACTCCTTTCA
CGTGCCGGTG ATACGGTAAG GTCGGTGCTC GCCAGCTATC CAGCAATGCG CCAACGCTAT
CGTCGCCTCT GCAGGGCGGT GCTCAACGTC CGGCAGCGGC GCTCGCTTCC TTCCGTCGAG
CAGCACGTCG AAAACCGGAC ACTCTCCATG CTAAGAGCCG GTGCCGGTCT CAACGACGAA
ATGCCGCCGG TCATCTTTCC AAGGTGTGCG CCAACCGGCT ATCTGCCGAT GCTTCCGGTA
CCGCTATGGC CAGACGTGCT CCTGCGTGAA GAGACGGAGC GGCGAAACGG CGAGGACGAG
CCCGCTCGCG GTGGCGATAG AGCGGAAGGG TCGGAGACGA CACGCCATGT GGCGACACGC
GAGGCACAGC GGCAGTCCGA GCGGAGCCCG TTCATCCTCA ACCGCTTCGA GAAGATCCTC
GCCATGGCCG AAATGGTCAA TGTCGACCGT CCGGCGGACG ACAGCGATGA CCACGACGCC
AGCGCCGCCG ACGAACTCGA CGACATGACG CTCGGCGAAC GCAAGGGACG CCCGGCCGCG
CGCTTTCGCT TCGACCTCGA CCTGCCCCCG GAAGCGCTGG ACCGCACGCC GCTCATGGCG
GAACTCACCT ATCCCGAATG GGACTATCGC GGCGGCGGCT ACCTCAAGGA CCATTGCCGG
GTGCTTGCCG CGCCCGCCTC GGCAGAAGGC CTGCCGGTAG AAGCGGATCC GACGACGAAG
AGCCTGATCC GGCGTGTGCG CCGTCAGTTC GAGGTACTGC GGCCGCGTCA CGAGATGCTG
AGGGCACAGA TCGATGGCGC CGACCTCGAT CTCGACGCGG TTGTGCGGGC GCGCACAGAC
CTCAGGGCCG GCGGGCAGGG CAGCGACCGC ATCCACATGA TGAGCCGGCC GCAGGCGCAC
GACCTTGCGG TGACGATCCT CATGGACGTG TCGCTCTCCA CCGACGCCTG GTTCGACGAT
CTTCGCGTCC TCGATGTCGA GAAGCAAGCG CTTCAGGTCC TGGCGCATGG GCTTTCCGCC
TGTGGCGATG CCCACGAAAT CCTCACCTTC ACGTCCCGGC GGCGAGATTG GGTGCGGATC
GAGACCGTGA AGGCTTTCGA CGAGGCGATG AGCGCGACGA TCGAGGCGCG CATCGCGGCG
CTGAAACCCG GCTACTACAC CCGCATGGGC GCGGCCATCC GCCACGCCGC AGCAAGGCTT
GTCGAACGGC CGAACCGCCG CAAGCTCCTC ATTGTCCTAA CCGACGGCAA GCCCAACGAC
GTCGACCACT ACGAGGGTCG TTTCGCGCTC GAGGACAGCC GCCGCGCCGT CGGTGAAACG
CGCCGCTCGG GCATCAGCGT CTTCGGGGTG ACGGTGGATC GCGAGGCGAA ATCCTATGTG
CCGGTCATAT TCGGCCAGAA CGGCTACGCC GTCGTCAGCA ATATCGGCAG GCTGCCTGCC
GCCCTGCCGG CGATCTATCG CGGCCTTGTA AGCTAG
 
Protein sequence
MLDFLELEET VGRAWHRLIG NTRTWPRFPD EAVRLGEVQA VFAVYFRGLG GERAVQIAPA 
RGRTSAHRLR LRQRMGLGEE KLVQPARDHA TLMLPAEVDL FPSRRLNRDL YFWLAAMMAV
MPLKHVGAAD PLSRDLALLS RAGDTVRSVL ASYPAMRQRY RRLCRAVLNV RQRRSLPSVE
QHVENRTLSM LRAGAGLNDE MPPVIFPRCA PTGYLPMLPV PLWPDVLLRE ETERRNGEDE
PARGGDRAEG SETTRHVATR EAQRQSERSP FILNRFEKIL AMAEMVNVDR PADDSDDHDA
SAADELDDMT LGERKGRPAA RFRFDLDLPP EALDRTPLMA ELTYPEWDYR GGGYLKDHCR
VLAAPASAEG LPVEADPTTK SLIRRVRRQF EVLRPRHEML RAQIDGADLD LDAVVRARTD
LRAGGQGSDR IHMMSRPQAH DLAVTILMDV SLSTDAWFDD LRVLDVEKQA LQVLAHGLSA
CGDAHEILTF TSRRRDWVRI ETVKAFDEAM SATIEARIAA LKPGYYTRMG AAIRHAAARL
VERPNRRKLL IVLTDGKPND VDHYEGRFAL EDSRRAVGET RRSGISVFGV TVDREAKSYV
PVIFGQNGYA VVSNIGRLPA ALPAIYRGLV S