Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_6285 |
Symbol | |
ID | 5320587 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009621 |
Strand | + |
Start bp | 1203581 |
End bp | 1204933 |
Gene Length | 1353 bp |
Protein Length | 450 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640777884 |
Product | coproporphyrinogen III oxidase |
Protein accession | YP_001314816 |
Protein GI | 150378221 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
TIGRFAM ID | [TIGR00538] oxygen-independent coproporphyrinogen III oxidase |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.180348 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.950475 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAACCGG CTCTTGTCGC AAAATATGGC GAGGCACGTC TGCCCCGCTA CACAAGCTAT CCGACGGCGC CACGTTTCTC GACCGCCGTC AGCGCCGGGA CCTATGGCGA CTGGCTCGCC GCCATCGCAC CGGAGCAGAA GGCGTCGCTC TACCTGCACA TCCCCTTTTG TCGTTCGATG TGTTGGTACT GCGGCTGTCA CACGACGATC ACCCAGCGCG ACCAGCCGAT CCTCGATTAT CTCGACATGC TTCGCGAGGA GGTCCGTCTA GTCTCGGCAA AGACGCGAGC GCCGATTAGC ATCGACCACG TGCATTTCGG CGGGGGGACT CCGACTGTCA TGCAGCCGGC GGAGTTCCGG GCGCTGGTAG CACTGCTGCG CGAGCGGTTC GAGTTCGCGA GCACCACCGA AATCGCCGTG GAGATCGACC CGCGAACCCT CGAGCCGGAA ATGGCGACGG CCCTCGGCGA AGCCGGTGTC CGCAGGGCGA GCCTCGGGGT GCAGAGCTTC GACCCGGTCG TGCAGAAGGC CATCAACCGG ATCCAGAGCG AGAAGCAGAC GATGGAGGCT GTTTCGCGCC TGCGTCAGTC CGGCGTCGGC AGCATCAATT TCGATCTCAT CTACGGCCTG CCGCACCAGA CAGTCGAATC CTGCATCGCG ACCGCCGAGG CAGCGATTCG GATGGGACCC GAGCGCTTCG CCGTCTTCGG GTACGCCCAC ATCCCGTCGT TCAAGAAGCA CCAGAAGCTG ATCGACGAGC ATGCGCTTGC TGGTGCGGAA GGCCGCGTCG CCCAGGCCGA AGCCATAGCG GCGACACTCG TCGCCGCCGG CTACCGCCGC ATCGGCCTCG ACCATTTCGC CCTCCCGGAC GACGGCCTGG CGGTCGCGCA GGCAAGAGGT CAACTGCACC GCAATTTCCA GGGCTACACG ACGGATGCCT GCGAAACGCT CATCGGCTTC GGCGCCTCGG CGATCGGACG AATGAAGGAC GGCTATGTGC AGAACGAGGT ACCGCCGGGC CTGTACGCTC AGCGCATAGC CTCGCGTCGG CTTGCAACGG TGAAAGGCTA CCGCATGACA CCGGAGGATA GGCTTCGGGC AAGCATCATC GAGCGGCTGA TGTGCGACTT CGGCGTCGAT GTTCCCGCCC TTGCCTCTGC GCACGGCTTT GACCCGGAGA TGCTGCTCCG CGGCAACGCC AGGCTCGCAA TGCTGGAAAG CGACGGCATC CTTGATATCG CCGACGGCGT CATACGGCTG CGCGAGGGGG GACGCTTCCT CATCCGCGCC GCCGCTGCAG CCTTCGACGC CTATATCGAG CAATCGGGAC GGACGCATAG CAAGGCGGCG TGA
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Protein sequence | MQPALVAKYG EARLPRYTSY PTAPRFSTAV SAGTYGDWLA AIAPEQKASL YLHIPFCRSM CWYCGCHTTI TQRDQPILDY LDMLREEVRL VSAKTRAPIS IDHVHFGGGT PTVMQPAEFR ALVALLRERF EFASTTEIAV EIDPRTLEPE MATALGEAGV RRASLGVQSF DPVVQKAINR IQSEKQTMEA VSRLRQSGVG SINFDLIYGL PHQTVESCIA TAEAAIRMGP ERFAVFGYAH IPSFKKHQKL IDEHALAGAE GRVAQAEAIA ATLVAAGYRR IGLDHFALPD DGLAVAQARG QLHRNFQGYT TDACETLIGF GASAIGRMKD GYVQNEVPPG LYAQRIASRR LATVKGYRMT PEDRLRASII ERLMCDFGVD VPALASAHGF DPEMLLRGNA RLAMLESDGI LDIADGVIRL REGGRFLIRA AAAAFDAYIE QSGRTHSKAA
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