Gene Smed_6259 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_6259 
Symbol 
ID5320561 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009621 
Strand
Start bp1179221 
End bp1180002 
Gene Length782 bp 
Protein Length260 aa 
Translation table11 
GC content59% 
IMG OID640777859 
Producthypothetical protein 
Protein accessionYP_001314791 
Protein GI150378196 
COG category[L] Replication, recombination and repair 
COG ID[COG3293] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.147576 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGCACGCG GCGACCTTTC GGATATGGAA TGGCGGATCA TCGAGGGGCT GCTGCCCACC 
GAACGCGGCA GGAAGTCTCG GCCCGCGCAT GACAATCGGC AATATCTGAA CGGCATGCTG
CATGTTCTTC GGGTCGGCTG CCCCTGGCGC GATATGCATG AGCGCTACGG AAAGTGGAAT
TCGGTCTATG TGCGCTTCCG CCGTTGGGCC GAGCAAGGCG TTTGGGATGC TCTCCTTGAG
ACCCTCGTCG AACTCGGGCT GACGGATGAC TGGCAGCACA TGATCGACAG CACCACGGTT
CGCGGCCACT CGCAGGCTGC GGGCGCAAAA GGGGGACTTA TCAGGAGGCT TTTGGTCGAT
CACGCGGCGG CTTTACGACG AAAATCCACG CCCGCGCAGA CGGTCAAGGA CGCCCTCTCG
GTTTCATCCT GACCGGTGGC GAGGCTTCGG ATTACAATGC CGTTCCTGAT CTGCTGGCGA
TACCGGTCAG CAAACCGAGA TTGTTTCTGG CCGACAAAGG TTATGACGGC GACTTCCTGC
GTGAGGAACT GCTGATCCAC GGCATCAGGC CGGTCATTCC ACCAAAGGCC AACAGGAAGA
ACCCGCCTGC CTGCGACTTC CGGGCATACA AGGATCGAAA CCGCATCGAA CGGATGTTCA
ACCGCCTCAA ACAGTTCCGT CGCATTGCGA CCCGATACGA CAAGACCCGA AAATCCTTCT
CAGCATTCCT CGCCCTGGCC GCCGCCAAGA TATGGCTGCC ATACTTTGTC AACGGGACCT
AA
 
Protein sequence
MARGDLSDME WRIIEGLLPT ERGRKSRPAH DNRQYLNGML HVLRVGCPWR DMHERYGKWN 
SVYVRFRRWA EQGVWDALLE TLVELGLTDD WQHMIDSTTV RGHSQAAGAK RGTYQEAFGR
SRGGFTTKIH ARADGQGRPL GFILTGGEAS DYNAVPDLLA IPVSKPRLFL ADKGYDGDFL
REELLIHGIR PVIPPKANRK NPPACDFRAY KDRNRIERMF NRLKQFRRIA TRYDKTRKSF
SAFLALAAAK IWLPYFVNGT