| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_6258 |
|---|
| Symbol | |
|---|
| ID | 5320560 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009621 |
|---|
| Strand | - |
|---|
| Start bp | 1177840 |
|---|
| End bp | 1178786 |
|---|
| Gene Length | 947 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640777858 |
|---|
| Product | transposase |
|---|
| Protein accession | YP_001314790 |
|---|
| Protein GI | 150378195 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3335] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0699861 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGAAGG CTTTATCGAT GGATTTGCGG GTCCGGGTTC TGGCGGCGGT CGGCCAGGGC
CTGTCGCACC GAGCTGCAGC GGAACGTTTT GGTGTGAGCG CTGCCAGTAT CAGCCGCTGG
CGCAGTCGTG AGCGTGAACG GGGCGACGCC CGGCCCAAGG CGCTTGGCGG CGATCGTCGC
TCGGGTCGGA TCGATGCACA TATGAGTGTT ATCGTCGAAG CCTTGGGCCC GGAGAAGGAC
GCTACCTTGG AAGAGGTACG CCGCAGTCTG GCGGATCGGG GTCTCTTCTT CGGCTTCGGG
ACGATCCAGC GTTTCTTCAA GCGGCACAAC ATCACGCGCA AAAAAAGAGT GCGCATGCCT
CGGAGCAAAA CCGGCCTGAC ATCCTGAAGC GGCGGCAAGA CTGGTTCGAC GGCCAACTTG
ACCTTGATCC GGAACGTCTC GTTTTTATCG ATGAGACCTG GGCTTCCACC AACATGGCGC
GCCGCTACGG TCGATGCCGC ATAGGCGAAC GCTTGCGGAT CAGCGTCCCT CATGGTCACT
GGAAAACGAC AACCTTCATC GGCGCTCTGA CGGTGCGCGG CTTCATCGCC CCCTTTGTCA
TCGACAGGCC CATCAACCGC CTTTCGTTCG AGACTTACGT CGAGAAGGTG CTGCTGCCCG
AGCTGCGCCC CGATGACGTG GTCGTTATGG ACAATCTCTC CAGCCACAAA GGGCCAAGGG
TTCGCGAAAT GATCGAAAGC GTTGGTGCGA AGCTAGAGTA CCTCCCACCG TACAGCCCCG
ATTTCAACCC GATCGAAAAC GCATTCTCAA AGCTCAAAGC CCTGTTGAGA AAAGCCGCCG
AACGGTCCAT CGAGAGCCTC TGGACAACAA TCGGGCGACT ACTCCAACTC TTCACCCCAG
ACGAATGCCG CAACTATTTC GCAGCCGCAG GCTATGATGC AGCGTGA
|
|---|
| Protein sequence | MSKALSMDLR VRVLAAVGQG LSHRAAAERF GVSAASISRW RSRERERGDA RPKALGGDRR
SGRIDAHMSV IVEALGPEKD ATLEEVRRSL ADRGLFFGFG TIQRFFKRHN ITRKKKSAHA
SEQNRPDILK RRQDWFDGQL DLDPERLVFI DETWASTNMA RRYGRCRIGE RLRISVPHGH
WKTTTFIGAL TVRGFIAPFV IDRPINRLSF ETYVEKVLLP ELRPDDVVVM DNLSSHKGPR
VREMIESVGA KLEYLPPYSP DFNPIENAFS KLKALLRKAA ERSIESLWTT IGRLLQLFTP
DECRNYFAAA GYDAA
|
|---|
| |