| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_6232 |
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| Symbol | |
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| ID | 5320534 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009621 |
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| Strand | + |
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| Start bp | 1153011 |
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| End bp | 1154636 |
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| Gene Length | 1626 bp |
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| Protein Length | 541 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640777836 |
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| Product | transcriptional regulator NifA |
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| Protein accession | YP_001314768 |
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| Protein GI | 150378173 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | [TIGR01817] Nif-specific regulatory protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCAAAC AGGACAAGCG GTCCGCCGAA ATTTACAGCA TATCAAAGGC TCTGATTGCC
CCCACTCGTC TTGACATCAC GCTGAACAAT TTCGTGAATA CCCTCTCTTT GGTTCTGCGC
ATGCGCCGCG GCGGACTCGA GATTCCGGCG TCGGAAGGAG AGGCAAAGAT CACAGCGGCT
ACCCGCAGCA GTGGGTCTCC TTCTGCCGCT GACTATACTG TACCAAAGGC CGCAATAGAC
CAAATCATCA CTGCCGGGCG GCTGGTCGTA CCAGACGTTT GCAACTCGGA GCTGTTCAAG
GATCAGATAA AATGGCACGG AATTGGTCCG ACGGCCTTCA TCGCTGCGGC GGTGGAGGTC
GATCACGAAA CGGGCGGAAT GCTGTGGTTC GAGCGCGCCA AAGAGTCCGG TTATGACTAT
GAAGAGGAGG TCCACTTGCT TTCCATGGCC GCCGATCTTG CGGGCAGGGC CATTCGGCTT
CATCGCACTA TCAGCAGGCG TGGGCGGACA TTTGCCGAAG AGCAGCAAGA ACAGCAGAAT
TCACATGATG AGCAGAGCCA GGGTTTCGCC CGCCAGCGGC TGCTCAAGAA TGACGGGATC
ATCGGGGAAA GTCCCGCCCT CATGGCGGCG GTAGAAACCG CCAAAGTCGT GGCAGAGACC
AATTCAACCG TTCTCCTCAG GGGCGAAAGC GGAACTGGCA AGGAATGCTT TGCGAAGCTA
ATTCACCAGC ATTCGACTCG GCAAAAAAAG CCGTTCATTA AGTTCAATTG CCCCGCGCTG
TCTGAGAGCC TTCTCGAATC AGAGCTGTTT GGACATGAGA AAGGTGCCTT CACCGGGGCT
ATTGCTCAAC GAGTAGGCCG TTTCGAATCG GCGAATGGCG GAACGTTGCT GCTCGATGAA
ATCGGCGAGA TCCCGCCGGC ATTCCAAGCA AAACTGCTAC GCGTAATACA GGAAGGTGAA
TTTGAACGAG TCGGCGGCAC AAAGACGCTG AAAGTCGACA TCCGGCTCAT ATTCGCCACA
AATAAGGATC TCGAAATGGC GGTCCGGAAT GGGGAGTTCA GGGAAGACCT TTACTACCGC
ATCAGTGTGG TGCCCATAAC TTTGCCGCCG CTTAGGAAAC GCGACGGTGA CATTCCGCTC
CTTGCAAAAG CTTTCCTTCA GCGGTTCAAT GAAGAGAACG GTCGTGGTCT CCATTTCGTG
CCGTCTGCGC TTGACCACTT GTCGAGGTGC AAGTTCCCCG GAAACGTTCG CGAACTGGAA
AACTGTGTGC GGAGGACTGC AACTCTCGCC AGGGCAAAGA CGATCACTTC GTCAGATTTC
GCCTGCCAGA CGGACCAGTG CTTTTCTTCT CGCCTCTGGA AAGGCATTCG CTGTTCGCAT
TGCCACATTG CCACCGATGC GTCCGCGGGT ACGACACCGT TGGTAGGAGC GCCAGCCAAT
GATGTTCCGC CGAAGGATCC CGCATCCGCA GGGGCGGCAT CCAATCTGAT CGAGCGCGAC
CGGTTGATCA GTGCGCTGGA GGAGGCCGGT TGGAATCAGG CAAAGGCAGC TCGCATCCTC
GAAAAAACGC CCCGGCAGGT CGGGTATGCT ATACGTCGGC ATGGTGTAGA GGTGAGAAAG
CTCTAA
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| Protein sequence | MRKQDKRSAE IYSISKALIA PTRLDITLNN FVNTLSLVLR MRRGGLEIPA SEGEAKITAA
TRSSGSPSAA DYTVPKAAID QIITAGRLVV PDVCNSELFK DQIKWHGIGP TAFIAAAVEV
DHETGGMLWF ERAKESGYDY EEEVHLLSMA ADLAGRAIRL HRTISRRGRT FAEEQQEQQN
SHDEQSQGFA RQRLLKNDGI IGESPALMAA VETAKVVAET NSTVLLRGES GTGKECFAKL
IHQHSTRQKK PFIKFNCPAL SESLLESELF GHEKGAFTGA IAQRVGRFES ANGGTLLLDE
IGEIPPAFQA KLLRVIQEGE FERVGGTKTL KVDIRLIFAT NKDLEMAVRN GEFREDLYYR
ISVVPITLPP LRKRDGDIPL LAKAFLQRFN EENGRGLHFV PSALDHLSRC KFPGNVRELE
NCVRRTATLA RAKTITSSDF ACQTDQCFSS RLWKGIRCSH CHIATDASAG TTPLVGAPAN
DVPPKDPASA GAASNLIERD RLISALEEAG WNQAKAARIL EKTPRQVGYA IRRHGVEVRK
L
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