Gene Smed_6225 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_6225 
SymbolnifH 
ID5320527 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009621 
Strand
Start bp1146077 
End bp1146970 
Gene Length894 bp 
Protein Length297 aa 
Translation table11 
GC content58% 
IMG OID640777830 
Productnitrogenase reductase 
Protein accessionYP_001314762 
Protein GI150378167 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1348] Nitrogenase subunit NifH (ATPase) 
TIGRFAM ID[TIGR01287] nitrogenase iron protein 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.572672 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAGCTC TGCGTCAGAT CGCGTTCTAC GGTAAGGGGG GTATCGGCAA GTCCACGACC 
TCCCAAAATA CACTCGCCGC GCTTGTCGAC CTGGGGCAAA AGATCCTTAT TGTCGGCTGC
GATCCGAAAG CGGACTCCAC GCGCCTCATC CTGAACGCAA AGGCACAGGA CACCGTACTG
CATCTTGCGG CAACCGAAGG TTCGGTCGAA GACCTCGAAC TCGAGGACGT GCTCAAAGTT
GGTTACAGAG GCATCAAGTG CGTGGAGTCC GGTGGCCCAG AGCCGGGCGT TGGCTGCGCC
GGACGCGGCG TCATCACCTC GATCAACTTC CTGGAAGAGA ACGGCGCCTA TAACGATGTC
GACTACGTTT CATACGACGT GCTAGGGGAC GTCGTATGCG GCGGCTTTGC GATGCCCATT
CGCGAAAACA AGGCTCAGGA AATCTACATC GTCATGTCCG GTGAGATGAT GGCGCTCTAT
GCCGCCAACA ACATCGCCAA GGGTATCCTG AAATACGCCC ATGCGGGCGG CGTGCGGCTA
GGGGGCTTGA TTTGCAACGA GCGCCAGACC GACCGGGAAC TCGACCTCGC CGAGGCACTG
GCCGCCAGGC TCAATTCCAA GCTCATCCAC TTCGTGCCGC GCGACAATAT CGTTCAGCAC
GCAGAGCTCA GAAAGATGAC AGTGATCCAA TATGCGCCGG ACTCCAAGCA AGCCGGGGAA
TATCGCGCCC TGGCTGAAAA GATCCATGCA AATTCCGGCC GAGGCACCGT CCCTACACCG
ATCACTATGG AGGAACTAGA GGACATGCTG CTCGACTTTG GAATCATGAA GAGCGACGAG
CAGATGCTTG CCGAACTCCA TGCCAAGGAA GCCAAGGTAA TAGCCCCCCA CTGA
 
Protein sequence
MAALRQIAFY GKGGIGKSTT SQNTLAALVD LGQKILIVGC DPKADSTRLI LNAKAQDTVL 
HLAATEGSVE DLELEDVLKV GYRGIKCVES GGPEPGVGCA GRGVITSINF LEENGAYNDV
DYVSYDVLGD VVCGGFAMPI RENKAQEIYI VMSGEMMALY AANNIAKGIL KYAHAGGVRL
GGLICNERQT DRELDLAEAL AARLNSKLIH FVPRDNIVQH AELRKMTVIQ YAPDSKQAGE
YRALAEKIHA NSGRGTVPTP ITMEELEDML LDFGIMKSDE QMLAELHAKE AKVIAPH