Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_6225 |
Symbol | nifH |
ID | 5320527 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009621 |
Strand | - |
Start bp | 1146077 |
End bp | 1146970 |
Gene Length | 894 bp |
Protein Length | 297 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640777830 |
Product | nitrogenase reductase |
Protein accession | YP_001314762 |
Protein GI | 150378167 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1348] Nitrogenase subunit NifH (ATPase) |
TIGRFAM ID | [TIGR01287] nitrogenase iron protein |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.572672 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAGCTC TGCGTCAGAT CGCGTTCTAC GGTAAGGGGG GTATCGGCAA GTCCACGACC TCCCAAAATA CACTCGCCGC GCTTGTCGAC CTGGGGCAAA AGATCCTTAT TGTCGGCTGC GATCCGAAAG CGGACTCCAC GCGCCTCATC CTGAACGCAA AGGCACAGGA CACCGTACTG CATCTTGCGG CAACCGAAGG TTCGGTCGAA GACCTCGAAC TCGAGGACGT GCTCAAAGTT GGTTACAGAG GCATCAAGTG CGTGGAGTCC GGTGGCCCAG AGCCGGGCGT TGGCTGCGCC GGACGCGGCG TCATCACCTC GATCAACTTC CTGGAAGAGA ACGGCGCCTA TAACGATGTC GACTACGTTT CATACGACGT GCTAGGGGAC GTCGTATGCG GCGGCTTTGC GATGCCCATT CGCGAAAACA AGGCTCAGGA AATCTACATC GTCATGTCCG GTGAGATGAT GGCGCTCTAT GCCGCCAACA ACATCGCCAA GGGTATCCTG AAATACGCCC ATGCGGGCGG CGTGCGGCTA GGGGGCTTGA TTTGCAACGA GCGCCAGACC GACCGGGAAC TCGACCTCGC CGAGGCACTG GCCGCCAGGC TCAATTCCAA GCTCATCCAC TTCGTGCCGC GCGACAATAT CGTTCAGCAC GCAGAGCTCA GAAAGATGAC AGTGATCCAA TATGCGCCGG ACTCCAAGCA AGCCGGGGAA TATCGCGCCC TGGCTGAAAA GATCCATGCA AATTCCGGCC GAGGCACCGT CCCTACACCG ATCACTATGG AGGAACTAGA GGACATGCTG CTCGACTTTG GAATCATGAA GAGCGACGAG CAGATGCTTG CCGAACTCCA TGCCAAGGAA GCCAAGGTAA TAGCCCCCCA CTGA
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Protein sequence | MAALRQIAFY GKGGIGKSTT SQNTLAALVD LGQKILIVGC DPKADSTRLI LNAKAQDTVL HLAATEGSVE DLELEDVLKV GYRGIKCVES GGPEPGVGCA GRGVITSINF LEENGAYNDV DYVSYDVLGD VVCGGFAMPI RENKAQEIYI VMSGEMMALY AANNIAKGIL KYAHAGGVRL GGLICNERQT DRELDLAEAL AARLNSKLIH FVPRDNIVQH AELRKMTVIQ YAPDSKQAGE YRALAEKIHA NSGRGTVPTP ITMEELEDML LDFGIMKSDE QMLAELHAKE AKVIAPH
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