Gene Smed_6179 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_6179 
Symbol 
ID5320481 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009621 
Strand
Start bp1099841 
End bp1103038 
Gene Length3198 bp 
Protein Length1065 aa 
Translation table11 
GC content56% 
IMG OID640777798 
Productacriflavin resistance protein 
Protein accessionYP_001314730 
Protein GI150378135 
COG category[V] Defense mechanisms 
COG ID[COG0841] Cation/multidrug efflux pump 
TIGRFAM ID[TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium)
[TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.160015 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTCCTCA CACGTATCAG CATCAACCAT CCGGTCTTCG CTACCATGAT GATGGTGATG 
ATCCTTGTCC TTGGTCTGTT TTCATATGGT CGACTCGGTG TCGATCACTA CCCCGAGACC
GACCTGCCAG TCGTAGTGGT CGCGACCACC TACACCGGAG CATCGCCCGA ATCGGTCGAA
AGCGAGATCT CACGGCCGAT TGAGGCGGCG CTCAACACTA TCGGCGGAAT CGACACCATC
ACCTCGGAAT CCTACGAAGG GCGTTCGATC GTCGTGGTGC AGTTCGAAGT CGATGTCGAT
TCACAAGACG CGGCACAGGA GGTGCGCGAC AGGGTTGCGC GTCTTGAAAC TAAGTTTCCC
GACGCAGTGG CGACCCCTCA GGTCACGCGA TACAAGCCCG AAGGCCAGGC AATCCTCTCT
GTTGCAGTGT CCTCGACGAG CCGGACGCTG CCCGAAATCA CCACGCTTGC CACTCGCGTG
ATCAACAATC GCCTGAGCGT TATATCGGGC GTCGGCCAAG TTTCACTGAT TGGCAGCAGC
GAGCGGCAAG TTCTCGTTGT TGTGGACCCT GATCGTCTCG GGGCCTACGG CCTCGCTGTC
GCCACCGTCA TCGAAGCAAT CCGAGGCGAA AACCAGGATC GGGCGGCGGG AACGCTTACA
TCCGGCATCA ATCAGCGAAT CGTAACGGTC GAGGGACGCA TTGCGAATAC TTCAGCCTTC
AACCGCATCA TCGTCGCTCA AAGAAATGGC TATCCCGTCT ACCTTTCGGA AGTGGCAACC
ATTCTCGACA CAGGCGCCGA AGTTACCAGC CTTGCAAACT ACCAAGGCCA GACGACTCTC
GGTTTGCACA TCGTCAAGGT CCAAGGCGCC AACACGGTCG AGGTTGCGTC CGCAGTTCGC
AGGGAAGTTT CCGCGCTGAA CGCAGAACTG ACAAAGGACA ACGTCCAACT CACCATCACA
CGTGACAACT CCCGCCCCAT TGCTTCCCAG GTTTCCCAAG TACAGCGAAC GCTGGTCGAA
GGAGGTGTTC TGTCAGTGCT GATCGTGTTC ATATTTTTGA ACTCCTGGCG ATCCACGGTT
ATCACCGGCC TTACCCTCCC CATTTCAGTT ATTGGCACAT TCGCGGCAAT TTACGCTCTC
GGCTTCACGC TGAACATCAT GACTCTTATG GCACTCTCCT TGTCCATCGG CATTCTGATT
GACGATGCGA TAGTCGTACG TGAAAACATC ACTCGCCATC TACAGATGGG CAAGGATCCT
GTAAGGGCGG CCCTGGATGG TACCAACGAG ATTGGCCTTG CAGTGCTGTC GACAACACTG
TGCATCGTCG CTGTGTTTCT GCCGGTTGCC TTCATGGGCG GGCTGATCGG TCGCTTTTTC
CTTCAGTTTG GCGTTACCGT AGCCGTGGCC GTGTTCATTT CGCTCTTTGT GTCCTTTACT
CTTGATCCGA TGCTGTCGAG CATTTGGCGC GATCCCCAAT CTCAAAAAAC TGCCAAGCGA
GGCTTCTTCG GGCAACTGAT TGAGCGGTTC GATCAATGGT TCGAGGGACT TGCAAGCCGC
TATCGGTCGG TTATCTACTT CACATTCGAC TACCGGAAAA CGACAATTGC TATTGTCCTA
GGCATGTTTG TCGTCAGCCT GCTGCTTGTT CCGCGCATCG GAACTGAGTT TTTGCCGCCA
CCCGACCAGG GAGAAGTGAG CATATCGCTG GAAGCCAACG AAGGCGCTTC CCTCGATTAC
ATGGCCGCGA AAGTCGGTCA GATCGAACGA GCACTGCGAG AATTCAATTA TGTCTCCTCG
ACGTATTCCA CTATCAATTC CGGGGAAATG CGTGGCTTCA ACAAGGCCCT GGTGGCCGTG
CAACTTGTGC ACAGCAGTCA AAGGAGGCTG AAGACGGCGG AAACCCTCGG TCCTATCCGC
CGGCGGCTTT CCAGGATCGC CGGCCTCGAA ATCTCAGTTG GACAGCGTTC GGAAGTGGTC
GGATCGATAA AGCCGTTACA ATTGTCGATC CTCGGGGATG GTGACGAGGA GCTGCGACGG
ATCTCCGATC AAATCACCTC GGTGCTTGCG GCCATTCCGG GCGCTACGGA GATCGAATCT
TCAATCGAAA AGCTTCGACC AACGCTGGCT GTTCGGGTGC GCCGCGAGGC GGCGAGCGAT
CTCGGCGTCT CGATCGCAAC GATAGGCGAT ACACTCAGGT CACTAGTGGC GGGTGATGCA
ATATCTGTAT GGAACAGCCC TGACGGAGAA TCCCACGATG TCGTGGTGCG CCTCCCCGCC
GCCGGCCGAG AGAACGCCGC ACAGCTCCGT AATCTTCCAA TCGCCACCGC TCGTATGGAC
GACAATGGCA AGCCGATAAT GGTCTTACTC GATCAGGTAG CCGATGTCGT CGAGAGCACC
GCGCCTGCTC AGATCACCCG CAAGGATCTG TCCCGGGACA TTCGCATATC CAGCAACATT
GAAGGAAGGA CGTTGGGCGA CGTTGTGGCC GATCTGAAGG CCGCGATGAC AAAGATGGAT
ATCCCAGTGG GGTTTCGAAT TTCATTCGGC GGCGATGCGG AGAACCTGAC CGAGAGCACC
GCCTATGCAC TCCAGTCGCT GGCGATGGCC GTCATCTTCA TCTACATTAT CTTGGCTTCT
CAGTTCGGCT CCTTCATCCA GCCAATCGCC ATCATCATGA CAATGCCGCT ATCCTTGATG
GGTGTCCTGC TTGGCCTTCT GTTTACGGGC TCCACACTCA ATATGTTCTC GATGATCGGC
ATCCTGATGC TGATCGGTTT GGTGACAAAG AACGCGATCC TTCTGGTCGA CTACTCCAAT
CTAGGCGTTC GCGAAGGCAA AAGCCTGCGT CAGAGCCTTG CAGATGCCGG AGCAGTAAGA
CTCCGGCCGA TCGTGATGAC GACCCTCGCC ATGATTTTCG GTATGCTCCC AACAGCCCTA
GGCTTGGGCG AAGGCGGCGC GCAGCGCGCC CCAATGGCCC ATGCAATCAT CGGCGGGTTG
ATATCCTCCA CCCTCCTCAG TTTGGTCTTT GTGCCTGTCG TGCTGACTTA TCTTGATGCC
TTCGCCCGGC GCGTAAGGCG CTGGGTGCCT TCTCCTACTG GATCGAATGC TTCGGCTCAG
CACGACGGGT CCGATAAGAC TAAAACTCCT GCTTGCGCTC TCACAAGCCA GGATCAGTCA
GGGACAACAA TCATGTGA
 
Protein sequence
MFLTRISINH PVFATMMMVM ILVLGLFSYG RLGVDHYPET DLPVVVVATT YTGASPESVE 
SEISRPIEAA LNTIGGIDTI TSESYEGRSI VVVQFEVDVD SQDAAQEVRD RVARLETKFP
DAVATPQVTR YKPEGQAILS VAVSSTSRTL PEITTLATRV INNRLSVISG VGQVSLIGSS
ERQVLVVVDP DRLGAYGLAV ATVIEAIRGE NQDRAAGTLT SGINQRIVTV EGRIANTSAF
NRIIVAQRNG YPVYLSEVAT ILDTGAEVTS LANYQGQTTL GLHIVKVQGA NTVEVASAVR
REVSALNAEL TKDNVQLTIT RDNSRPIASQ VSQVQRTLVE GGVLSVLIVF IFLNSWRSTV
ITGLTLPISV IGTFAAIYAL GFTLNIMTLM ALSLSIGILI DDAIVVRENI TRHLQMGKDP
VRAALDGTNE IGLAVLSTTL CIVAVFLPVA FMGGLIGRFF LQFGVTVAVA VFISLFVSFT
LDPMLSSIWR DPQSQKTAKR GFFGQLIERF DQWFEGLASR YRSVIYFTFD YRKTTIAIVL
GMFVVSLLLV PRIGTEFLPP PDQGEVSISL EANEGASLDY MAAKVGQIER ALREFNYVSS
TYSTINSGEM RGFNKALVAV QLVHSSQRRL KTAETLGPIR RRLSRIAGLE ISVGQRSEVV
GSIKPLQLSI LGDGDEELRR ISDQITSVLA AIPGATEIES SIEKLRPTLA VRVRREAASD
LGVSIATIGD TLRSLVAGDA ISVWNSPDGE SHDVVVRLPA AGRENAAQLR NLPIATARMD
DNGKPIMVLL DQVADVVEST APAQITRKDL SRDIRISSNI EGRTLGDVVA DLKAAMTKMD
IPVGFRISFG GDAENLTEST AYALQSLAMA VIFIYIILAS QFGSFIQPIA IIMTMPLSLM
GVLLGLLFTG STLNMFSMIG ILMLIGLVTK NAILLVDYSN LGVREGKSLR QSLADAGAVR
LRPIVMTTLA MIFGMLPTAL GLGEGGAQRA PMAHAIIGGL ISSTLLSLVF VPVVLTYLDA
FARRVRRWVP SPTGSNASAQ HDGSDKTKTP ACALTSQDQS GTTIM