Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_6179 |
Symbol | |
ID | 5320481 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009621 |
Strand | + |
Start bp | 1099841 |
End bp | 1103038 |
Gene Length | 3198 bp |
Protein Length | 1065 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640777798 |
Product | acriflavin resistance protein |
Protein accession | YP_001314730 |
Protein GI | 150378135 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.160015 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTTCCTCA CACGTATCAG CATCAACCAT CCGGTCTTCG CTACCATGAT GATGGTGATG ATCCTTGTCC TTGGTCTGTT TTCATATGGT CGACTCGGTG TCGATCACTA CCCCGAGACC GACCTGCCAG TCGTAGTGGT CGCGACCACC TACACCGGAG CATCGCCCGA ATCGGTCGAA AGCGAGATCT CACGGCCGAT TGAGGCGGCG CTCAACACTA TCGGCGGAAT CGACACCATC ACCTCGGAAT CCTACGAAGG GCGTTCGATC GTCGTGGTGC AGTTCGAAGT CGATGTCGAT TCACAAGACG CGGCACAGGA GGTGCGCGAC AGGGTTGCGC GTCTTGAAAC TAAGTTTCCC GACGCAGTGG CGACCCCTCA GGTCACGCGA TACAAGCCCG AAGGCCAGGC AATCCTCTCT GTTGCAGTGT CCTCGACGAG CCGGACGCTG CCCGAAATCA CCACGCTTGC CACTCGCGTG ATCAACAATC GCCTGAGCGT TATATCGGGC GTCGGCCAAG TTTCACTGAT TGGCAGCAGC GAGCGGCAAG TTCTCGTTGT TGTGGACCCT GATCGTCTCG GGGCCTACGG CCTCGCTGTC GCCACCGTCA TCGAAGCAAT CCGAGGCGAA AACCAGGATC GGGCGGCGGG AACGCTTACA TCCGGCATCA ATCAGCGAAT CGTAACGGTC GAGGGACGCA TTGCGAATAC TTCAGCCTTC AACCGCATCA TCGTCGCTCA AAGAAATGGC TATCCCGTCT ACCTTTCGGA AGTGGCAACC ATTCTCGACA CAGGCGCCGA AGTTACCAGC CTTGCAAACT ACCAAGGCCA GACGACTCTC GGTTTGCACA TCGTCAAGGT CCAAGGCGCC AACACGGTCG AGGTTGCGTC CGCAGTTCGC AGGGAAGTTT CCGCGCTGAA CGCAGAACTG ACAAAGGACA ACGTCCAACT CACCATCACA CGTGACAACT CCCGCCCCAT TGCTTCCCAG GTTTCCCAAG TACAGCGAAC GCTGGTCGAA GGAGGTGTTC TGTCAGTGCT GATCGTGTTC ATATTTTTGA ACTCCTGGCG ATCCACGGTT ATCACCGGCC TTACCCTCCC CATTTCAGTT ATTGGCACAT TCGCGGCAAT TTACGCTCTC GGCTTCACGC TGAACATCAT GACTCTTATG GCACTCTCCT TGTCCATCGG CATTCTGATT GACGATGCGA TAGTCGTACG TGAAAACATC ACTCGCCATC TACAGATGGG CAAGGATCCT GTAAGGGCGG CCCTGGATGG TACCAACGAG ATTGGCCTTG CAGTGCTGTC GACAACACTG TGCATCGTCG CTGTGTTTCT GCCGGTTGCC TTCATGGGCG GGCTGATCGG TCGCTTTTTC CTTCAGTTTG GCGTTACCGT AGCCGTGGCC GTGTTCATTT CGCTCTTTGT GTCCTTTACT CTTGATCCGA TGCTGTCGAG CATTTGGCGC GATCCCCAAT CTCAAAAAAC TGCCAAGCGA GGCTTCTTCG GGCAACTGAT TGAGCGGTTC GATCAATGGT TCGAGGGACT TGCAAGCCGC TATCGGTCGG TTATCTACTT CACATTCGAC TACCGGAAAA CGACAATTGC TATTGTCCTA GGCATGTTTG TCGTCAGCCT GCTGCTTGTT CCGCGCATCG GAACTGAGTT TTTGCCGCCA CCCGACCAGG GAGAAGTGAG CATATCGCTG GAAGCCAACG AAGGCGCTTC CCTCGATTAC ATGGCCGCGA AAGTCGGTCA GATCGAACGA GCACTGCGAG AATTCAATTA TGTCTCCTCG ACGTATTCCA CTATCAATTC CGGGGAAATG CGTGGCTTCA ACAAGGCCCT GGTGGCCGTG CAACTTGTGC ACAGCAGTCA AAGGAGGCTG AAGACGGCGG AAACCCTCGG TCCTATCCGC CGGCGGCTTT CCAGGATCGC CGGCCTCGAA ATCTCAGTTG GACAGCGTTC GGAAGTGGTC GGATCGATAA AGCCGTTACA ATTGTCGATC CTCGGGGATG GTGACGAGGA GCTGCGACGG ATCTCCGATC AAATCACCTC GGTGCTTGCG GCCATTCCGG GCGCTACGGA GATCGAATCT TCAATCGAAA AGCTTCGACC AACGCTGGCT GTTCGGGTGC GCCGCGAGGC GGCGAGCGAT CTCGGCGTCT CGATCGCAAC GATAGGCGAT ACACTCAGGT CACTAGTGGC GGGTGATGCA ATATCTGTAT GGAACAGCCC TGACGGAGAA TCCCACGATG TCGTGGTGCG CCTCCCCGCC GCCGGCCGAG AGAACGCCGC ACAGCTCCGT AATCTTCCAA TCGCCACCGC TCGTATGGAC GACAATGGCA AGCCGATAAT GGTCTTACTC GATCAGGTAG CCGATGTCGT CGAGAGCACC GCGCCTGCTC AGATCACCCG CAAGGATCTG TCCCGGGACA TTCGCATATC CAGCAACATT GAAGGAAGGA CGTTGGGCGA CGTTGTGGCC GATCTGAAGG CCGCGATGAC AAAGATGGAT ATCCCAGTGG GGTTTCGAAT TTCATTCGGC GGCGATGCGG AGAACCTGAC CGAGAGCACC GCCTATGCAC TCCAGTCGCT GGCGATGGCC GTCATCTTCA TCTACATTAT CTTGGCTTCT CAGTTCGGCT CCTTCATCCA GCCAATCGCC ATCATCATGA CAATGCCGCT ATCCTTGATG GGTGTCCTGC TTGGCCTTCT GTTTACGGGC TCCACACTCA ATATGTTCTC GATGATCGGC ATCCTGATGC TGATCGGTTT GGTGACAAAG AACGCGATCC TTCTGGTCGA CTACTCCAAT CTAGGCGTTC GCGAAGGCAA AAGCCTGCGT CAGAGCCTTG CAGATGCCGG AGCAGTAAGA CTCCGGCCGA TCGTGATGAC GACCCTCGCC ATGATTTTCG GTATGCTCCC AACAGCCCTA GGCTTGGGCG AAGGCGGCGC GCAGCGCGCC CCAATGGCCC ATGCAATCAT CGGCGGGTTG ATATCCTCCA CCCTCCTCAG TTTGGTCTTT GTGCCTGTCG TGCTGACTTA TCTTGATGCC TTCGCCCGGC GCGTAAGGCG CTGGGTGCCT TCTCCTACTG GATCGAATGC TTCGGCTCAG CACGACGGGT CCGATAAGAC TAAAACTCCT GCTTGCGCTC TCACAAGCCA GGATCAGTCA GGGACAACAA TCATGTGA
|
Protein sequence | MFLTRISINH PVFATMMMVM ILVLGLFSYG RLGVDHYPET DLPVVVVATT YTGASPESVE SEISRPIEAA LNTIGGIDTI TSESYEGRSI VVVQFEVDVD SQDAAQEVRD RVARLETKFP DAVATPQVTR YKPEGQAILS VAVSSTSRTL PEITTLATRV INNRLSVISG VGQVSLIGSS ERQVLVVVDP DRLGAYGLAV ATVIEAIRGE NQDRAAGTLT SGINQRIVTV EGRIANTSAF NRIIVAQRNG YPVYLSEVAT ILDTGAEVTS LANYQGQTTL GLHIVKVQGA NTVEVASAVR REVSALNAEL TKDNVQLTIT RDNSRPIASQ VSQVQRTLVE GGVLSVLIVF IFLNSWRSTV ITGLTLPISV IGTFAAIYAL GFTLNIMTLM ALSLSIGILI DDAIVVRENI TRHLQMGKDP VRAALDGTNE IGLAVLSTTL CIVAVFLPVA FMGGLIGRFF LQFGVTVAVA VFISLFVSFT LDPMLSSIWR DPQSQKTAKR GFFGQLIERF DQWFEGLASR YRSVIYFTFD YRKTTIAIVL GMFVVSLLLV PRIGTEFLPP PDQGEVSISL EANEGASLDY MAAKVGQIER ALREFNYVSS TYSTINSGEM RGFNKALVAV QLVHSSQRRL KTAETLGPIR RRLSRIAGLE ISVGQRSEVV GSIKPLQLSI LGDGDEELRR ISDQITSVLA AIPGATEIES SIEKLRPTLA VRVRREAASD LGVSIATIGD TLRSLVAGDA ISVWNSPDGE SHDVVVRLPA AGRENAAQLR NLPIATARMD DNGKPIMVLL DQVADVVEST APAQITRKDL SRDIRISSNI EGRTLGDVVA DLKAAMTKMD IPVGFRISFG GDAENLTEST AYALQSLAMA VIFIYIILAS QFGSFIQPIA IIMTMPLSLM GVLLGLLFTG STLNMFSMIG ILMLIGLVTK NAILLVDYSN LGVREGKSLR QSLADAGAVR LRPIVMTTLA MIFGMLPTAL GLGEGGAQRA PMAHAIIGGL ISSTLLSLVF VPVVLTYLDA FARRVRRWVP SPTGSNASAQ HDGSDKTKTP ACALTSQDQS GTTIM
|
| |