| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_6178 |
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| Symbol | |
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| ID | 5320480 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009621 |
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| Strand | + |
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| Start bp | 1098734 |
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| End bp | 1099837 |
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| Gene Length | 1104 bp |
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| Protein Length | 367 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640777797 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001314729 |
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| Protein GI | 150378134 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.19288 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGATAT CTGCTCAGTG CAATCTCCAG AAACTGGCGT TCGCCACAAG CTTGGCCGTG
ACCATCGTTC TTTCGCAAGG TCGGGCAATT GGGCAGGTTA AACACGGTAG CCCGATCGAG
CTTGCCAAAG CCGACGTAAG CACCGCCGTC CGGCAAGACA TGGCAAACGA CGTCCGTATA
GTCGGCTCTC TCACGCCCAT TCGACGTTCT ACACTGACCT CACGCGTATC CTCGACGATC
ATTGAGCTAC CTGTTCAGAT CGGGGACGTG GTCAATGCCG GCGATCTCCT CGTCCGTTTC
GAAAGGGGAG CTCTCGAATC GGCGGTGACG GGGCGAAAAG CAGAGGCGGA TGCCCTTCGC
GCGCAGACCG ACCTCGCCGA GGCAGTGCTT GAGCGAAACA CGCGACTTAG TGAACGACGC
GCGGCATCGG AGGCCACGAG GCTTGCTGCG CTGGCGGATG TGCTTGATCT TCGCGCGCAG
CTAAGATCGA AACAGGCCGA GGTTTCGGAT GCCGAACGAT CGCTCTCCCA TGCAGAAGTG
CGAGCCGAGT TCGGTGGCGT TATTGCTGCG CGTTCGGTTG AAGAGGGCCA GACAGTTCCG
CTGAATACCC AACTGATGAC TATTGTCGAG CTCAATCGGC TGGAAGTTGA CGCCGGTGTT
CCCACAAGCC GGATCCCGCT CATTCGCCTC AAGCAGCCCG TAGAGCTGAC GGTAGAGGGC
TTTCCGGGCC GGACGTTTTC CGGAGAGGTC GCTCGTATCT CGCCCACCGC CGAAGCCGGA
TCCCGTGCTG TGCGAGTGTT CATCGCCGTC GACAACGAGG AAGGCCTGTT GAGAGGCGGA
ATGTTCACCA TCGGCGATCT AAGAGTAGAC GACCAGAAGG ATGTCATCGC ACTACCGGCG
GCTTCAATCC GACACGACGC AGATGGTTTT TTCGTTCTCA AGGTGAAAGC GGGCGTTTTG
CAAAGGCGAC CTGTCGGGCT CGGCAGGAGT TGGAGCGACC GTGATCTTGT GCAGGTGTCG
GGAGTGAGCG AGGGCGATGT TATCGTAACC GCCCCATTGC CCGATCTCGT CGCCAATACG
CCCGTGATCA TCGAAGGCAT CTGA
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| Protein sequence | MTISAQCNLQ KLAFATSLAV TIVLSQGRAI GQVKHGSPIE LAKADVSTAV RQDMANDVRI
VGSLTPIRRS TLTSRVSSTI IELPVQIGDV VNAGDLLVRF ERGALESAVT GRKAEADALR
AQTDLAEAVL ERNTRLSERR AASEATRLAA LADVLDLRAQ LRSKQAEVSD AERSLSHAEV
RAEFGGVIAA RSVEEGQTVP LNTQLMTIVE LNRLEVDAGV PTSRIPLIRL KQPVELTVEG
FPGRTFSGEV ARISPTAEAG SRAVRVFIAV DNEEGLLRGG MFTIGDLRVD DQKDVIALPA
ASIRHDADGF FVLKVKAGVL QRRPVGLGRS WSDRDLVQVS GVSEGDVIVT APLPDLVANT
PVIIEGI
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