| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_6161 |
|---|
| Symbol | |
|---|
| ID | 5320463 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009621 |
|---|
| Strand | - |
|---|
| Start bp | 1085897 |
|---|
| End bp | 1086259 |
|---|
| Gene Length | 363 bp |
|---|
| Protein Length | 120 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640777788 |
|---|
| Product | type IV secretion system pilin subunit VirB2 |
|---|
| Protein accession | YP_001314720 |
|---|
| Protein GI | 150378125 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3838] Type IV secretory pathway, VirB2 components (pilins) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.141107 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGTCAC TTAACAAACA TCGTGCGCGT TTGAGTCCTG TTGCTTTCTT GAAAGCCATG
TCGCGCACAG CGGTTGACCA TGCGCCCGCT GCCGGCGGAG CGGCGGTGTG GAGCATTGTC
TGCTCCGGGC CAGCGACGGC GCAAGTGACG GGGGGGACCG ACCCTGCCAC AATGGTGAAT
AATATCTGTG CATTCATCCT TGGTCCCTTC GGACAGTCTC TGGCTGTGCT CGGCATCGTC
GCCATCGGCA TATCGTGGAT GTTCGGCCGT GCTTCACTCG GTCTCGTTGC CGGTGTCATC
GGGGGGATCG TCATCATGTT CGGGGCCAGC TTCCTTGGTA AAGCCCTCAT AGGGGCCGGA
TGA
|
|---|
| Protein sequence | MASLNKHRAR LSPVAFLKAM SRTAVDHAPA AGGAAVWSIV CSGPATAQVT GGTDPATMVN
NICAFILGPF GQSLAVLGIV AIGISWMFGR ASLGLVAGVI GGIVIMFGAS FLGKALIGAG
|
|---|
| |