Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_6159 |
Symbol | |
ID | 5320461 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009621 |
Strand | - |
Start bp | 1083205 |
End bp | 1085574 |
Gene Length | 2370 bp |
Protein Length | 789 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640777786 |
Product | type IV secretion system protein VirB4 |
Protein accession | YP_001314718 |
Protein GI | 150378123 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0089682 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTCGGCA CAAATGGCAG GAACGAGAGG TCTGGTGAGA TATATCTACC ATATGTCGGC CACCTCAGCG ATCAGGTTGT CCTTCTCGAA GACGGCTCAG TCATGGCTAT GGCACACGTC AAAGGTTTGC CCTTCGAAAT GGAAGACGTT GCCATCCGCA ATGCACGCTG CCGAGCGTTC AATACGCTCT TACGCAACAT TGCCGATGAT AGTGTATCAA TATGTGCTCA TCTGGTCCGA CATAACGACG TGGCGTTGCC CCCGGCGCGG CACTTTCATA GCGGGTTTGC TGGTAGTCTG AGCGAAGCTT ATGAGCGGCG TGTGCTGTCC GGAAAACTCT TTCGAAACGA TCATTTCCTC ACCTTGGTCG TGTTTCCCCG AACTGCGGTC GGTAAAATCA CGGGCCGGTT CATCAAGCGG AACAATAGAA ACGAGAACGA TTTAGCAAAT CAGACGCGGA ACCTGGAAGA TCTGTGGCAC ATCACTAGTG GCGCCCTCGA CGCCTATGGT CTCCGCCGGC TTGGTCTCCG CGAGAAAGAT GGCGTGATTT TCTCGGAAAT CGCGGAGGCG CTCCGACTTA TAATGACCTG CCGTGCCACT CCGGTTCCAG TGGTTAGTGG TTCACTGGGC GCTTCGATTT ATACCGACCG AGTAATCTGC GGCAAGCGGG CACTGGAGAT TCGAACCCCG GGAGATAGCT ACGTTGGCTC ATTGTTCTCA TTTCGAGAAT ATCCGGCAAA GACGCGGCCA GGCATGCTCA ATCCGCTATT GTCCGCGAAT TTCCCGCTCG TGTTGAGCCA AAGTTTCTCC TTCCTCACGC GTGCACAGGC CCATGCCAAA CTCAGCCTCA AGTCCAGTCA AATGACGAGT TCCGGTGACA AGGCCGTCTC CCAAATCAAT GAACTCGCCG AGGCAGAGGA CGCGTTGGCA AGCAGCGAAT TCGTAATGGG CGCGCATCAT TTGAGCCTGT GCGTGTATGC CGATGATCTC AATAGCCTTG CCAACCGCGC CGCAAGCGCC CGCACGCGAT TGACGGATGC GGGCGCCGTT ATCGTCCAAG AGGGTATTGG TATGGAGGCG GCTTATTGGG CGCAACTTCC GGGGAACACC AAGTGGCGCA CGCGACCCGG GGCGATCACC TCACGCAATT TCGCGGGCCT TGTCTCGTTC GAGAATTTCC CAAGTGGCAA GGATTCCGGC CACTGGGGCA ACTCGGTTGC GCGCTTCCGC ACCAATGGTG GAACCCCTTT CGACTACCTC CCTCACGAGA ATGACGTGGG TATGACGGCA ATATTCGGAC CCGTCGGAAA AGGCAAAACA ACGCTCATGA CCTTTGTCCT TGCGATGCTC GAACAGAGCA TGGTTGGACA CGATGGTGCG ATTGTCTTCT TTGACAAGGA CCGCGGTGGT GAACTGCTGG TACGTGCCAC GGGAGGCACG TATCTGGCGT TACGTAGAGG CGTTCCCAGT GGCCTGGCGC CTCTACGGGC CCTGGACGAT ACGTCGGCCT CCCGAGACTT TCTGCGCGAG TGGGTGACAG CCTTGATCGA GAGCGATGGA CGGGGAGCTA TTTCGCCGGA AGAGAACCGC CGCCTGGAAC GCGCCATCGT CCGGCAGCTT TCATTTGAGC CCGCTATGCG TTCCCTCGCG GGCCTACGCG AATTCCTATT ACACAGCCCG TCCGAAGGCG CAGGAGCGCG ACTGGAGCGG TGGTGCAGAG GAAACGCGCT CGGTTGGGCC TTCGATGGCG AGGTGGATGA AGTAAGACTG CATGCCTCCA TTACCGGCTT CGATATGACA CAGATTCTGG AGTACGAAGA GGTTTGCGCG CCGGCGGCCG CATACCTCCT CCATCGCGTG GGCGCTGTTG TGGATGGCCG TCGCTTTGTC ATGTGTTGCG ACGAGTTTCG ATTTTATTTA TTAAACCCTC AGTTCGCTGC AGTTGTAGAC AAGTTCTTGC TCACTGTTCG CAAGAATAAC GGCATGTTGA TACTCGCAAC ACAGCAGCCT GAGCATGTTC TCGAATCGCC CCTCGGAGCC AGTCTCGTGG CACAATGCAT GACAAAAATT TTCTATCCAT CTCCGACGGC GGATCGATCA GCCTATGTCG GCGGCTTAAA GTGTACCGAA GGAGAATATC AAGCCGTTCG CGAGCAGATG GCAATCGGGA GCCGCAAATT TCTGCTTAAG CGCGAGAGCG GAAGCGTTAT CTGCGAATTC GACCTCGGCG AGATGCGCGA ATATGTCGCC GTGCTATCGG GTCGGGCCAA CACGGTGCGT TTTGCCGATC AGCTCCGTGC CAGACACGGG GATGCTCCTG GTGCGTGGGT AGACGAGTTC ATGGCCCGTT ACCAAGAAGT TCAAGACTGA
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Protein sequence | MFGTNGRNER SGEIYLPYVG HLSDQVVLLE DGSVMAMAHV KGLPFEMEDV AIRNARCRAF NTLLRNIADD SVSICAHLVR HNDVALPPAR HFHSGFAGSL SEAYERRVLS GKLFRNDHFL TLVVFPRTAV GKITGRFIKR NNRNENDLAN QTRNLEDLWH ITSGALDAYG LRRLGLREKD GVIFSEIAEA LRLIMTCRAT PVPVVSGSLG ASIYTDRVIC GKRALEIRTP GDSYVGSLFS FREYPAKTRP GMLNPLLSAN FPLVLSQSFS FLTRAQAHAK LSLKSSQMTS SGDKAVSQIN ELAEAEDALA SSEFVMGAHH LSLCVYADDL NSLANRAASA RTRLTDAGAV IVQEGIGMEA AYWAQLPGNT KWRTRPGAIT SRNFAGLVSF ENFPSGKDSG HWGNSVARFR TNGGTPFDYL PHENDVGMTA IFGPVGKGKT TLMTFVLAML EQSMVGHDGA IVFFDKDRGG ELLVRATGGT YLALRRGVPS GLAPLRALDD TSASRDFLRE WVTALIESDG RGAISPEENR RLERAIVRQL SFEPAMRSLA GLREFLLHSP SEGAGARLER WCRGNALGWA FDGEVDEVRL HASITGFDMT QILEYEEVCA PAAAYLLHRV GAVVDGRRFV MCCDEFRFYL LNPQFAAVVD KFLLTVRKNN GMLILATQQP EHVLESPLGA SLVAQCMTKI FYPSPTADRS AYVGGLKCTE GEYQAVREQM AIGSRKFLLK RESGSVICEF DLGEMREYVA VLSGRANTVR FADQLRARHG DAPGAWVDEF MARYQEVQD
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