Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_6155 |
Symbol | |
ID | 5320457 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009621 |
Strand | - |
Start bp | 1080639 |
End bp | 1081352 |
Gene Length | 714 bp |
Protein Length | 237 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640777782 |
Product | type IV secretion system protein VirB8 |
Protein accession | YP_001314714 |
Protein GI | 150378119 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3736] Type IV secretory pathway, component VirB8 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.141854 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGAGCG CTGAACATGC TCTCCTGGTG GAGCGAGGAG CGCTTGCCGC GCACTATATT GAAGTAGAGG CCTTCCAAAC GTCACGTGCG AAGTCGGCGC GGCGTCTTTC CAGGGTTCTG GTCGTCATTG CGACGGCGGC TGTTTTTGGA AATATCGCGC AGGCCTTCAC CATCGCGACT ATGGTTCCGC TTGCCAAGCT CGTGCCTGTG TATCTCTGGG TACGACCGGA TGGAACCGTT GACAGCGAAG TGTCCGTGTC TCGACTTCCC GCAACGCAAG AACAGGCCGT TATCAACGCT TCACTCTGGC AATATGTCCG TCTGCGCGAG GGGTATACAG CCGACACAGC TCAATACGCC TATGATCTCG TATCGAGCTT CAGCGCACCA TCTGTGCGCC TGGAATATCA GCATCACTTT AATTACCCTA ATCCGACGTC ACCGCAGGTC ACAATCGGTG AGGGGGGGAG ACTAGATGTC GAGCACATCT CCTCAAATGA TATTGCGACG GGCGTGCAGC AGATTCGTTT CAACCGAACG CTCATGATGG ATGGCCAGAC GCCGGTGATG AGTACATGGA CTGCAACGGT CCGGTATGAA AAGGTGACAA GCCTGTCCGG TGAATCGAGA CTGTCCAACC CAGGGGGGTT GACTGTTACC TCCTACCAAG TCTCGGAAGA CACCGTATGG AACGAGGGGC GTAGCGAGCA ATGA
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Protein sequence | MKSAEHALLV ERGALAAHYI EVEAFQTSRA KSARRLSRVL VVIATAAVFG NIAQAFTIAT MVPLAKLVPV YLWVRPDGTV DSEVSVSRLP ATQEQAVINA SLWQYVRLRE GYTADTAQYA YDLVSSFSAP SVRLEYQHHF NYPNPTSPQV TIGEGGRLDV EHISSNDIAT GVQQIRFNRT LMMDGQTPVM STWTATVRYE KVTSLSGESR LSNPGGLTVT SYQVSEDTVW NEGRSEQ
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