Gene Smed_6154 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_6154 
Symbol 
ID5320456 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009621 
Strand
Start bp1079761 
End bp1080642 
Gene Length882 bp 
Protein Length293 aa 
Translation table11 
GC content55% 
IMG OID640777781 
Producttype IV secretion system protein VirB9 
Protein accessionYP_001314713 
Protein GI150378118 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3504] Type IV secretory pathway, VirB9 components 
TIGRFAM ID[TIGR02781] P-type conjugative transfer protein VirB9 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.208035 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATAACAA GGACCTTCCT CACAATAATC TGTTTGCTTT GCTTAGCGAT AGCCGCGCAT 
GCGGAGGACA CACCTGCGGC CGGCAAACTA GACCCGCGCA TGCGGTATCT GGCCTACAAT
CCTGACCAAG TCGTCCGACT ATCGACCGCT GTCGGGGCCA CGTTGGTTGT TACATTCGGC
GCCAGCGAGA CCGTAACAGC CGTCGCCGTC TCTAATAGCA AAGATCTGGC AGCCCTTCCG
CGCGGCCACT ATCTCTTTTT CAAGGCAAGC CAAGCCCTCC CGCCGCAGCC AGTCGTCGTG
CTGACCGCTA GCGAGGCAGG TACCCGACGA TATGTCTTCA GCATCTCTAC CAAGACCATG
TCTCAGCTTA CCAAAGAGCA GCCTGACCTC TATTATAGTG TGCAATTTGT CTATCCTGCC
GACGAAGCTG CTGCTCGGCA AAAACAAGCA GAAAAGTTGT CGATCGTCGG TCGGCTTCGG
GCGGATGCGG AGTATCAACA GAGGGCTCAG CATTTATTGG ATCAGCCGGC CGCAATCGCG
GATTCCGGAG CCAACAATTT CCATTACATC GCACAGGGCG ACCGTTCGCT TACGCCGTTG
GAGGTTTTTG ATAACGGAGT CAGTACTGTA TTCCGCTTTC CAGGCAATGT GCGCATCCCG
TCCATATACG TGATCAATCC GGACGGCAAG GAAGCCACCG CCAATTATTC GGTCAAAGGA
GACTATGTCG AGGTTCCCGC AGTTGCCCGT GAGTGGCGCC TGAGAGATGG CCATACGGTA
TTAGGCATCT GGAATAGCGC ATACGATCCC ATTGGACGAA AGCCGGGCAC CGGCACAGTG
AGACACGATG TGTGGCGCGT TCTGAAAGGG GCAAGTCGAT GA
 
Protein sequence
MITRTFLTII CLLCLAIAAH AEDTPAAGKL DPRMRYLAYN PDQVVRLSTA VGATLVVTFG 
ASETVTAVAV SNSKDLAALP RGHYLFFKAS QALPPQPVVV LTASEAGTRR YVFSISTKTM
SQLTKEQPDL YYSVQFVYPA DEAAARQKQA EKLSIVGRLR ADAEYQQRAQ HLLDQPAAIA
DSGANNFHYI AQGDRSLTPL EVFDNGVSTV FRFPGNVRIP SIYVINPDGK EATANYSVKG
DYVEVPAVAR EWRLRDGHTV LGIWNSAYDP IGRKPGTGTV RHDVWRVLKG ASR