Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_6154 |
Symbol | |
ID | 5320456 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009621 |
Strand | - |
Start bp | 1079761 |
End bp | 1080642 |
Gene Length | 882 bp |
Protein Length | 293 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640777781 |
Product | type IV secretion system protein VirB9 |
Protein accession | YP_001314713 |
Protein GI | 150378118 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3504] Type IV secretory pathway, VirB9 components |
TIGRFAM ID | [TIGR02781] P-type conjugative transfer protein VirB9 |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.208035 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATAACAA GGACCTTCCT CACAATAATC TGTTTGCTTT GCTTAGCGAT AGCCGCGCAT GCGGAGGACA CACCTGCGGC CGGCAAACTA GACCCGCGCA TGCGGTATCT GGCCTACAAT CCTGACCAAG TCGTCCGACT ATCGACCGCT GTCGGGGCCA CGTTGGTTGT TACATTCGGC GCCAGCGAGA CCGTAACAGC CGTCGCCGTC TCTAATAGCA AAGATCTGGC AGCCCTTCCG CGCGGCCACT ATCTCTTTTT CAAGGCAAGC CAAGCCCTCC CGCCGCAGCC AGTCGTCGTG CTGACCGCTA GCGAGGCAGG TACCCGACGA TATGTCTTCA GCATCTCTAC CAAGACCATG TCTCAGCTTA CCAAAGAGCA GCCTGACCTC TATTATAGTG TGCAATTTGT CTATCCTGCC GACGAAGCTG CTGCTCGGCA AAAACAAGCA GAAAAGTTGT CGATCGTCGG TCGGCTTCGG GCGGATGCGG AGTATCAACA GAGGGCTCAG CATTTATTGG ATCAGCCGGC CGCAATCGCG GATTCCGGAG CCAACAATTT CCATTACATC GCACAGGGCG ACCGTTCGCT TACGCCGTTG GAGGTTTTTG ATAACGGAGT CAGTACTGTA TTCCGCTTTC CAGGCAATGT GCGCATCCCG TCCATATACG TGATCAATCC GGACGGCAAG GAAGCCACCG CCAATTATTC GGTCAAAGGA GACTATGTCG AGGTTCCCGC AGTTGCCCGT GAGTGGCGCC TGAGAGATGG CCATACGGTA TTAGGCATCT GGAATAGCGC ATACGATCCC ATTGGACGAA AGCCGGGCAC CGGCACAGTG AGACACGATG TGTGGCGCGT TCTGAAAGGG GCAAGTCGAT GA
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Protein sequence | MITRTFLTII CLLCLAIAAH AEDTPAAGKL DPRMRYLAYN PDQVVRLSTA VGATLVVTFG ASETVTAVAV SNSKDLAALP RGHYLFFKAS QALPPQPVVV LTASEAGTRR YVFSISTKTM SQLTKEQPDL YYSVQFVYPA DEAAARQKQA EKLSIVGRLR ADAEYQQRAQ HLLDQPAAIA DSGANNFHYI AQGDRSLTPL EVFDNGVSTV FRFPGNVRIP SIYVINPDGK EATANYSVKG DYVEVPAVAR EWRLRDGHTV LGIWNSAYDP IGRKPGTGTV RHDVWRVLKG ASR
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