| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_6143 |
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| Symbol | |
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| ID | 5320445 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009621 |
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| Strand | + |
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| Start bp | 1070183 |
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| End bp | 1071829 |
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| Gene Length | 1647 bp |
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| Protein Length | 548 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640777774 |
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| Product | type IV secretion system protein VirD4 |
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| Protein accession | YP_001314706 |
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| Protein GI | 150378111 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGTTCAC TGGCAGTAGG TTATTGTGGG GCAAGCGCCT ACTCAACGTT CCGTTTTGGT
TTTGATGGAA GGGCTTTGAT GACATTTGAC ATCCTCGCTT TTTGGTATGA GACGCCTTTC
TATCTGGGAT ACACAACTCT CTTCTTCTAT AGGGGTTTGG CTGTCGTCGT CTTAACGTCG
GCAGCCATTC TGCTCGTTCA GCAGATGGTA TCCGTGCGCG ATCGGCAACA TCACGGTACT
GCACGCTGGG CTCGCGTGGA TGAAATGCGG CGCGCGGGTT ATCTTCAGCG GTACAGCCGC
ATCAGTGGAC CGGTGTTCGG AAAGACGAGC GGGCCTTTTT GGTCTGACTA CTACCTGACC
AATAGCGAGC AGCCTCACAG CCTCATCGTT GCGCCGACGC GCGCGGGAAA AGGCGTCGGC
ATTGTAATTC CAACGCTACT AACGTTCGAG GGCTCAGTGA TAGCCCTCGA CGTTAAGGGC
GAGCTCTTTG ATCTCACTTC TAGGGCTCGC AAAGCGCGGG GCGATAGCGT GTTCAAATTG
GCACCGCTAG ACCCCGAGCG GCGGACGAAT TGCTATAATC CTCTATTGGA TATCCTAGCA
TTGCCGTCAG AGCGGCAGTT CACCGAAGCG CGTCGTTTGG CGGCAAACCT CATTGCGACC
AAGGGACAGA GTGCGGAAGG TTTCATCAAC GGCGCACGAG ATCTTTTTGT CGCCGGCATT
CTTGCCTGCA TCGAGCGCGG TACGCCAACC ATCGGGGCCG TCTACGACCT CTTTGCTCAG
CCAGGGGAGA AATATAGCCT TTTTGCGCGT CTTGCGCAGG AGACCCAGAA TAAGGAGGCT
CAGCGGATCT TCGATGAAAT GGCGAGTAAT GATACAAAGA TTCTGACCTC CTACACTTCT
GTGCTCGGTG ATGGCGGGCT GAACTTATGG GCCGACCCGC TGATTAAAGC GGCGACAAGC
CGATCGGACT TCTCAATCTA CGACCTGCGA CGTCGCAGGA CATGCATTTA TCTTTGCGTC
AGCCCAAACG ATCTTGAGGT GGTCGCGCCT CTGATGCGCC TGCTCTTCCA GCAGGTCGTT
TCAATTCTGC AACGCTCGCT GCCCGGCAAG GACGAGAAGC ACGAAGTGCT ATTCCTGCTC
GATGAATTCA AGCATCTTGG TAAGCTCGAG GCGATTGAGA CTGCAATCAC CACGATCGCG
GGCTACAAGG GCCGTTTTAT GTTCATTATC CAAAGTCTCT CGGCACTGAC CGGAACATAC
GACGAATCTG GAAAGCAGAA TTTCCTCAGC AATACTGGTG TGCAGGTCTT TATGGCAACA
GCTGACGATG AGACACCGGT TTATATTTCG AAAGCCATCG GTGAATATAC ATTCCAAGCG
CGCTCAACTT CCTATACCCA AAGCCTTACG TTCGATCGCA ATATTCAACA CTCAGATCAA
GGAGCACCTT TATTAAGGCC AGAACAGGTG CGTCTACTAC CCGACAAGTA CCAGATCGTT
CTCATTAAGG GTCAGCCACC ATTGCAACTA CGAAAGGTAC GATATTATTC CGATCGCGCA
CTGAAGCGCA TCTTTGATAG CCAGACGGGC AGGCTTCCGG AGCCAGCACC CCTGATGATT
GCAGACGAGA GATTTAGCCA CGTCTAG
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| Protein sequence | MCSLAVGYCG ASAYSTFRFG FDGRALMTFD ILAFWYETPF YLGYTTLFFY RGLAVVVLTS
AAILLVQQMV SVRDRQHHGT ARWARVDEMR RAGYLQRYSR ISGPVFGKTS GPFWSDYYLT
NSEQPHSLIV APTRAGKGVG IVIPTLLTFE GSVIALDVKG ELFDLTSRAR KARGDSVFKL
APLDPERRTN CYNPLLDILA LPSERQFTEA RRLAANLIAT KGQSAEGFIN GARDLFVAGI
LACIERGTPT IGAVYDLFAQ PGEKYSLFAR LAQETQNKEA QRIFDEMASN DTKILTSYTS
VLGDGGLNLW ADPLIKAATS RSDFSIYDLR RRRTCIYLCV SPNDLEVVAP LMRLLFQQVV
SILQRSLPGK DEKHEVLFLL DEFKHLGKLE AIETAITTIA GYKGRFMFII QSLSALTGTY
DESGKQNFLS NTGVQVFMAT ADDETPVYIS KAIGEYTFQA RSTSYTQSLT FDRNIQHSDQ
GAPLLRPEQV RLLPDKYQIV LIKGQPPLQL RKVRYYSDRA LKRIFDSQTG RLPEPAPLMI
ADERFSHV
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