| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_6139 |
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| Symbol | |
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| ID | 5320441 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009621 |
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| Strand | + |
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| Start bp | 1064276 |
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| End bp | 1065418 |
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| Gene Length | 1143 bp |
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| Protein Length | 380 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640777770 |
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| Product | Pectate lyase |
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| Protein accession | YP_001314702 |
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| Protein GI | 150378107 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3866] Pectate lyase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAGCA TCGATCGAAC CTCTGTTTTG GGTGCTGGGC TGTTGCTGGC CCTAGGGTGC
ATGCCTTTGC CCGTCGCTGC TCAATCGGAT CCCAGTAGGG AGACCGCCAC AACGGGATGG
GCCACCCAGA ATGGCGGCAC CCGAGGCGGC GCACATGCGG CTGCAAGCGA TGTGTTCACG
GTGAGAAACG CCCGAGAATT GAAAAACGCC CTGGCGACTC GCGTTGGCCA GGGTGGGCGG
ATCGTCCGCG TCACCGGGTT GATCGACGTC AGCCAGGGGC GGGCCTACAA GACGTCCGCA
GAGATGGAAT CACGGGCAAA AATTGTACTT CCGCCTCGGA CAACCTTGAT TGGGGTCGGA
ACAAGGGCGG AACTTCAAGA GGCATATGTG GTCGTAAACT CGAACGACGT AATCATTCGA
AATCTAAGGA TCGAAAACCC TTGGGATCCA CAACCCGCCT GGAACCCGAA TGATGGAGAA
AACGGGAACT GGAATTCGCG ATTTGATGCT GTGACCATCG ATGGGGCCTG GAACGTTTGG
GTCGATCATG TCACCTTCAC CGACGGCCGC CGGACAGACG ACCAAAACGG AATGCAAAAC
GGCAGGCCCA AGCAGCACCA CGATGGCGCG CTCGACGTGC GAAACGGAGC GAACTTCGTA
ACCATCTCGT ATTCGATATT CCGCGACCAT GAGAAGAACA ATTTGATCGG CTCAAGCGAC
GGCGCCGACG GTGAGGACAG TGGTCGGCTC AAGGTTACGA TTCACAATAC TCTTTTCCAG
AACATTTCCG CACGGGCGCC GCGCGTCCGC TTCGGCCAAG TGCATCTCTA CAATAACTAT
CACACAGGAA GCATGGCGAA CCGCGTATAT CCGTTTTCAC ATGCTCATGG TGTGGGTAAA
GAATCCAGGA TCTTTTCCGA AGCCAACGTA TTCCGCATTG ATGGCGTGAA GGGCTGCGAT
AAGATCGCAG GTAATTACGG AGGGCGTGTC TATAGGGACG ACGGGTCGCT GCTCAATGGA
GCAACGCTCG TTTGCTCATG GAACCGCCAA ATCGGTTGGC GGCCGCCGTA TAGCTATACC
CCGCTGAACG CTGCGGAAGT GCCAGCGAAT GTGCTCGCGA AGGCTGGTGC AGGGAATCTG
TAA
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| Protein sequence | MNSIDRTSVL GAGLLLALGC MPLPVAAQSD PSRETATTGW ATQNGGTRGG AHAAASDVFT
VRNARELKNA LATRVGQGGR IVRVTGLIDV SQGRAYKTSA EMESRAKIVL PPRTTLIGVG
TRAELQEAYV VVNSNDVIIR NLRIENPWDP QPAWNPNDGE NGNWNSRFDA VTIDGAWNVW
VDHVTFTDGR RTDDQNGMQN GRPKQHHDGA LDVRNGANFV TISYSIFRDH EKNNLIGSSD
GADGEDSGRL KVTIHNTLFQ NISARAPRVR FGQVHLYNNY HTGSMANRVY PFSHAHGVGK
ESRIFSEANV FRIDGVKGCD KIAGNYGGRV YRDDGSLLNG ATLVCSWNRQ IGWRPPYSYT
PLNAAEVPAN VLAKAGAGNL
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