| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_6051 |
|---|
| Symbol | |
|---|
| ID | 5320353 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009621 |
|---|
| Strand | + |
|---|
| Start bp | 997658 |
|---|
| End bp | 998839 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640777706 |
|---|
| Product | thiamine pyrophosphate binding domain-containing protein |
|---|
| Protein accession | YP_001314638 |
|---|
| Protein GI | 150378043 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[H] Coenzyme transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG3961] Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.221657 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.609485 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGACGATAG CAGAAGGCCC GAGCCGTCGC CTAGCGGCCG TCGCGGGCTG CTGCCATAGA
CGCCGGTGCC TCTCGATGAG AGGCACCGGT CCGGCAAGTC TCAACCGATT TTGGAGTCAG
CCAATGACAG TTGCATTTCG CAGTAAGCCA GTGACAGTTG AGGACCCGGC ATATAGAGGT
CTGGCTATCG GCACTTATGC GCCTGCAGTC ACACCGGCGC CTGCCTTCGC GCAGACCGAC
CTGAAAATTC CCTATGTGAC CGAGCTTTTG AGCAAGGCCA TCCTGCCGGA CGACGATGCA
CAATTTGCCG GGGTGTTTGA TGGCAAATCG TCATCCCCCT ACGTCCAGTC TTTGGTCGAA
AGCTCCGATT TCGTATTGGC CCTAGGCGTC TGGTTGACGG ACATCAATGA TTTGGGCTGG
CCCATCGATC TCGATAAAAC AGCCTTCGCT TCCTGGAATA CACTGAAATA TGGCACAAGT
TTCATCGCAC AGGTTTCGCT CGCGGACCGC GTGGACGGCT TGATTGATAA AAGGGTAACG
TGCAAAGACC GAATTCTTCC AGCGAATACC GTCCAGCAAG CGCCCGTCAT GAATCCGGCA
GACGAACTTA CGTATCAGGT CTTCTACGAT TTCATCCAGA GCCAGGTCGA CGAAGATACC
ATCGTCGGCG CCGACGCGAG CTTAAATTAT TTCGGGAGCA TGCTTCTCAA AGTGGGTGCT
CGCCGCGGTT TCATCGTTCA ATCATCCTAT TCGGCGATCG GCTATATTGG GCCGGCCGCG
ACAGGGTTAT CTCTGGCGAA GCAAGATGGC CAGAGACTGA TGGTCTTATC GGGTGATGGC
GGGTTTCGGA TGACCGTTCA ATGCCTGTCG ACACAAACCC GTTTCAATCT CAATCCGATC
ATCTTCGTGA CAGACAACGG TGTCTATGGC GTGGAGCAAT GGCTTGCCGA TGCACCGGTT
TTCCATGGTA GCAAACCGTT CTATAATTCA TGCATCCTGC ACCGATGGAA TTACAGCAAG
TTGGCAGAAG TCTTTGGCTG CCAAGGATGG AAGGTGCACA CCTATGGCGA ACTGGTGGCA
GCTATAAATG GCGCCAAAGA CAACCTAAAC AGTCCGTTCA TCATCCAGGT TGTCGTGCCA
CAGCGGTCGA TCCCAGACAA TGCGAACTGG AAAGCAAACT AA
|
|---|
| Protein sequence | MTIAEGPSRR LAAVAGCCHR RRCLSMRGTG PASLNRFWSQ PMTVAFRSKP VTVEDPAYRG
LAIGTYAPAV TPAPAFAQTD LKIPYVTELL SKAILPDDDA QFAGVFDGKS SSPYVQSLVE
SSDFVLALGV WLTDINDLGW PIDLDKTAFA SWNTLKYGTS FIAQVSLADR VDGLIDKRVT
CKDRILPANT VQQAPVMNPA DELTYQVFYD FIQSQVDEDT IVGADASLNY FGSMLLKVGA
RRGFIVQSSY SAIGYIGPAA TGLSLAKQDG QRLMVLSGDG GFRMTVQCLS TQTRFNLNPI
IFVTDNGVYG VEQWLADAPV FHGSKPFYNS CILHRWNYSK LAEVFGCQGW KVHTYGELVA
AINGAKDNLN SPFIIQVVVP QRSIPDNANW KAN
|
|---|
| |