| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_6023 |
|---|
| Symbol | |
|---|
| ID | 5320325 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009621 |
|---|
| Strand | - |
|---|
| Start bp | 975394 |
|---|
| End bp | 976340 |
|---|
| Gene Length | 947 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640777690 |
|---|
| Product | transposase |
|---|
| Protein accession | YP_001314622 |
|---|
| Protein GI | 150378027 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3415] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.014729 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAGAC CTTTTTCGAA TGATCTTCGG GAACGCGTTG TCGATGCGGT GACGGGCGAG
GGCCTATCGT GCCGGGCAGC GGCCAAGCGC TTCGGCATCG GCATCAGCAC CGCGATCGAT
TGGGTGCGGC GGTTTCGCGA GACGGGCAGC GCCGCACCCG GCCAGATGGG TGGGCACAAG
CCCCGCAAGC TTTCCGGTCC GCACCGGGCT TGGCTGCTTT GCCGCTGCCG CGAGCGCGAC
TTCACGCTGC ACGGACTTGT CGCCGAGTTG AGCGAGCGCG GCCTGAAGGT GGATTATCGC
GCCGTCTGGA CCTTCGTGCA CGAAGAGGGG TTGAGTTATA AAAAAAGACG CTGGTCGCCA
GCGAACGGGA GCGGCCCGAC GTCGCCCGCC ACCGGGCACG ATGGCTGAAG CACTGCCCCG
GAATTGATCC CGCCCGCCTC GTTTTCATCG ATGAGACCTG GACGAAGACG AACATGGCGC
CGCTGCGGGG CTGGGCGCCT CGCGGCGAAC GACTGGTGGG CTACGCCCCC TTCGGCCATT
GGAACACCAT GACCTTTGTC GCCGCACTCA GGGCCGACCG CGTCAGCGCT CCCTTTATCC
TCGATGGCCC GATCAATGGC GAACGCTTCC GCATCTATGT CCAGCAAGTT CTGGTGCCGG
AACTCAAAGC CGGCGACATC GTCATCCTGG ACAATCTCGG CTCCCATAAG GGTCAGGAGA
TCCGCGCCGC CATCCGTAAG GCCGGCGCCC GCCTGTTCTT TCTGCCGAAA TATTCCCCCG
ATCTCAATCC GATCGAAAAG CTCTTCGCCA AAATCAAGCA CTGGTTGCGT GAGGCACAGG
CCAGATCACG CGATGCAATC CATGACGAAC TGCGCCACAT TCTCCAAGCC GTCACCCCAC
AGGAATGCGC AGCCTACTTC AAAGAGGCGG GATATGAACG GGCTTAA
|
|---|
| Protein sequence | MARPFSNDLR ERVVDAVTGE GLSCRAAAKR FGIGISTAID WVRRFRETGS AAPGQMGGHK
PRKLSGPHRA WLLCRCRERD FTLHGLVAEL SERGLKVDYR AVWTFVHEEG LSYKKKTLVA
SERERPDVAR HRARWLKHCP GIDPARLVFI DETWTKTNMA PLRGWAPRGE RLVGYAPFGH
WNTMTFVAAL RADRVSAPFI LDGPINGERF RIYVQQVLVP ELKAGDIVIL DNLGSHKGQE
IRAAIRKAGA RLFFLPKYSP DLNPIEKLFA KIKHWLREAQ ARSRDAIHDE LRHILQAVTP
QECAAYFKEA GYERA
|
|---|
| |