| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_6005 |
|---|
| Symbol | |
|---|
| ID | 5320307 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009621 |
|---|
| Strand | - |
|---|
| Start bp | 961354 |
|---|
| End bp | 962661 |
|---|
| Gene Length | 1308 bp |
|---|
| Protein Length | 435 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640777679 |
|---|
| Product | glutamine synthetase catalytic region |
|---|
| Protein accession | YP_001314611 |
|---|
| Protein GI | 150378016 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0174] Glutamine synthetase |
|---|
| TIGRFAM ID | [TIGR03105] glutamine synthetase, type III |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0483742 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.00440887 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | GTGACACAGG ATCTCGCGAC CATCGCCGCC GAGCGTGGCA TCAAATATTT CATGATCAGC
TATACCGACC TCTTCGGCGC TCAGCGCGCC AAGCTTGTCC CGACAGAAGC GATCGCCAAC
ATGCAGAAGG ATGGAGCGGG CTTTGCGGGC TTTGCCACTT GGCTCGACCT GACGCCGGCC
CATCCCGATC TCTTCGCCGT TCCCGATGCC TCCTCTGTCA TCCAGCTTCC CTGGAAGAAA
GACGTTGCCT GGGTCGCCGC CGATTGCGTG ATGGAAGACA AGCCCGTCGG GCAGGCGCCG
CGCGTCGTGT TGAAGAAGCT GGTCGCGGAG GCCGCGGAGC ATGGTCTGCG GGTGAAGACG
GGCGTCGAGC CAGAATTCTT CCTGATTTCG GCCGATGGCG AAAAGATCTC AGATGAATTC
GATACGGCGG AAAAGCCCTG CTACGACCAG CAGGCCCTGA TGCGCCGCTA TGACGTCATC
GCCGAGATCT GCGACTACAT GCTGGAACTC GGATGGAAGC CCTACCAGAA CGACCATGAG
GACGCGAACG GCCAGTTCGA GATGAACTGG GAATATGACG ATGCGCTGAA GACGGCCGAC
AAGCATTCCT TCTTCAAGTT CATGGTGAAA TCCGTCGCCG AGAAACACGG GCTGCGCGCC
ACCTTCATGC CAAAGCCCTT CAAGGGCCTA ACCGGCAATG GCTGCCATGC GCATATCTCT
GTCTGGGATA CGGACGGCAA GATCAATGCC TTTGCCGACA AGGCCATGCC CTTCGGTCTT
TCGGCCAAGG GCAAGACCTT CCTCGGCGGC ATCATGAAAC ATGCCTCGGC GCTGGCCGCG
ATCACCAATC CGACGGTTAA TTCCTACAAG CGCATCAATG CGCCACGCAC GATTTCGGGT
GCCACCTGGG CGCCCAATAC CGTCACCTGG ACCGGCAACA ACCGCACCCA CATGGTGCGC
GTCCCCGGCC CCGGTCGCTT CGAACTGCGG CTGCCCGATG GCGCGGTGAA CCCCTATCTT
CTCCAGGCGA TAATCATCGC AGCGGGCCTG AGCGGCCTGA AGAGCGATGC CGATCCGGGG
CCGCACTACG ACATCGACAT GTACCGCGAC GGCCATCTGG TGAATGATGC GCCCAAGTTG
CCGCTGAATT TACTCGACGC GCTGCGCGCC TATGAGGAAG ACGAAGGCCT GCAGGCGGCA
CTCGGCATGG AATTCTCCGC TGCCTATCTC AAGCTCAAAC ATGCCGAGTG GAATACGCAT
TGCTCGCAGT TCAGCGCTTG GGAGCACCAG ACGACATTAG ATGTCTGA
|
|---|
| Protein sequence | MTQDLATIAA ERGIKYFMIS YTDLFGAQRA KLVPTEAIAN MQKDGAGFAG FATWLDLTPA
HPDLFAVPDA SSVIQLPWKK DVAWVAADCV MEDKPVGQAP RVVLKKLVAE AAEHGLRVKT
GVEPEFFLIS ADGEKISDEF DTAEKPCYDQ QALMRRYDVI AEICDYMLEL GWKPYQNDHE
DANGQFEMNW EYDDALKTAD KHSFFKFMVK SVAEKHGLRA TFMPKPFKGL TGNGCHAHIS
VWDTDGKINA FADKAMPFGL SAKGKTFLGG IMKHASALAA ITNPTVNSYK RINAPRTISG
ATWAPNTVTW TGNNRTHMVR VPGPGRFELR LPDGAVNPYL LQAIIIAAGL SGLKSDADPG
PHYDIDMYRD GHLVNDAPKL PLNLLDALRA YEEDEGLQAA LGMEFSAAYL KLKHAEWNTH
CSQFSAWEHQ TTLDV
|
|---|
| |