| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_6004 |
|---|
| Symbol | |
|---|
| ID | 5320306 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009621 |
|---|
| Strand | - |
|---|
| Start bp | 960331 |
|---|
| End bp | 961212 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640777678 |
|---|
| Product | formyltetrahydrofolate deformylase |
|---|
| Protein accession | YP_001314610 |
|---|
| Protein GI | 150378015 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0788] Formyltetrahydrofolate hydrolase |
|---|
| TIGRFAM ID | [TIGR00655] formyltetrahydrofolate deformylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.91162 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0315018 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTACG TATTGACCGT ATCCTGCCAG TCGACCCGCG GCATCGTGGC GGCGATTTCG
GGGTATCTCG CCGAGCAGGG TTGCAACATT GTCGACAGCT CGCAGTTCGA CGATCTCGAC
ACTGGCCAGT TCTTCATGCG CGTCTCCTTC ATCTCGGAGG AAGGCGCGGT CCAAACAATA
ATCGAGCAGG GCTTCGTGCC CGTCGCCGAA CGTTTCGGCA TGAACTGGAA CCTCTTTGAC
GCTGCCAAGC GCGAGAAGGT TCTGCTGATG GTCTCGCGCT TCGGCCACTG CCTCAACGAC
CTTCTCTACC GCTGGAAGAT CGGCGCACTG CCGATCGACA TCGTCGGCGT CGTTTCCAAT
CACTTCGACT ACCAGAAGGT CGTCGTCAAC CACGACATTC CCTTCCACCA TATACCGGTG
ACCAAGGCCA ACAAGCCGGA GGTCGAAGCC CGGATCATGG ACCTGGTCGA GCAAACTGGC
ACTGAACTGA TCGTGCTGGC CCGCTACATG CAGATCCTGT CTGACCAGAT GTGCCAGAAA
ATGTCGGGCA AGATCATCAA CATCCACCAC TCTTTCCTGC CGAGCTTCAA GGGGGCGAAC
CCCTACAAGC AGGCATTCGA GCGCGGCGTG AAGCTGATCG GTGCAACTGC GCACTATGTC
ACCGCCGACC TCGACGAAGG CCCGATCATC GAGCAGGACA CAGTGCGCGT CACTCATGCC
CAGTCGCCGG AGGACTATGT CTCGCTCGGC CGCGACGTCG AGAGCCAGGT GCTGGCCCGC
GCCATCCACG CCCATATCCA CCACCGCACC TTCATCAATG GCAACCGCAC CGTGGTCTTC
CCGGCAAGCC CGGGTTCCTA CGCCTCGGAG CGTATGGGGT GA
|
|---|
| Protein sequence | MKYVLTVSCQ STRGIVAAIS GYLAEQGCNI VDSSQFDDLD TGQFFMRVSF ISEEGAVQTI
IEQGFVPVAE RFGMNWNLFD AAKREKVLLM VSRFGHCLND LLYRWKIGAL PIDIVGVVSN
HFDYQKVVVN HDIPFHHIPV TKANKPEVEA RIMDLVEQTG TELIVLARYM QILSDQMCQK
MSGKIINIHH SFLPSFKGAN PYKQAFERGV KLIGATAHYV TADLDEGPII EQDTVRVTHA
QSPEDYVSLG RDVESQVLAR AIHAHIHHRT FINGNRTVVF PASPGSYASE RMG
|
|---|
| |