Gene Smed_5934 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_5934 
Symbol 
ID5320236 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009621 
Strand
Start bp896984 
End bp897715 
Gene Length732 bp 
Protein Length243 aa 
Translation table11 
GC content62% 
IMG OID640777627 
Productcbb3-type cytochrome c oxidase subunit II 
Protein accessionYP_001314559 
Protein GI150377964 
COG category[C] Energy production and conversion 
COG ID[COG2993] Cbb3-type cytochrome oxidase, cytochrome c subunit 
TIGRFAM ID[TIGR00781] cytochrome c oxidase, cbb3-type, subunit II 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.632943 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.24446 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCATTC TCGACAAACA CGCGATACTC GAGCGCAATG CCACGCTGCT GCTGATAGGC 
TCGCTCCTGG TCGTCTCCAT CGGCGGAATC GTTGAAATCG CGCCGCTCTT CTATCTCGAA
AACACCATCG AGAAGGTCGA AGGCATGCGG CCATACTCTC CGCTGGAGCT TGCCGGCCGC
GACATCTACA TCCGCGAGGG ATGCTACGTC TGTCACAGCC AGATGATCCG TCCTTTCCGT
GACGAGGTGG AGCGCTACGG CCACTATTCG CTGGCGGCGG AGTCGATGTA CGACCATCCC
TTTCAATGGG GTTCCAAGCG AACTGGACCG GATCTCGCCC GCGTCGGCGA CCGCTATTCC
AATGAATGGC ACGTTCAGCA CATGATCGAG CCCCGCTCGG TCGTGCCGGA ATCTGTGATG
CCGAGCTACG CCTTCCTCAA GGAGACGCCG CTCGAGGTGA AGACTGTTGC CATGAGCCTC
GAGGCGAACA GGGCGGTCGG CGTTCCCTAC ACCGACGAGA TGATCGACAA CGCGGCAGCG
GACCTAAAGG CCCAGGCCGA TCCGAATGCC GACGGTTCGG GCGTGGAGGC ACGCTATCCC
AAGGCCAAGC TCGGCGACTT CGACGGCGAT CCGCAAAGGC TGACGGAGAT GGACGCGCTC
GTCGCCTATC TCCAGATGCT GGGCACGCTC GTCGACTTCT CCACCTACGA CGACGCCGCC
GGCTACCGCT GA
 
Protein sequence
MSILDKHAIL ERNATLLLIG SLLVVSIGGI VEIAPLFYLE NTIEKVEGMR PYSPLELAGR 
DIYIREGCYV CHSQMIRPFR DEVERYGHYS LAAESMYDHP FQWGSKRTGP DLARVGDRYS
NEWHVQHMIE PRSVVPESVM PSYAFLKETP LEVKTVAMSL EANRAVGVPY TDEMIDNAAA
DLKAQADPNA DGSGVEARYP KAKLGDFDGD PQRLTEMDAL VAYLQMLGTL VDFSTYDDAA
GYR