| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5932 |
|---|
| Symbol | |
|---|
| ID | 5320234 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009621 |
|---|
| Strand | - |
|---|
| Start bp | 895946 |
|---|
| End bp | 896815 |
|---|
| Gene Length | 870 bp |
|---|
| Protein Length | 289 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640777625 |
|---|
| Product | cytochrome c oxidase, cbb3-type, subunit III |
|---|
| Protein accession | YP_001314557 |
|---|
| Protein GI | 150377962 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2010] Cytochrome c, mono- and diheme variants |
|---|
| TIGRFAM ID | [TIGR00782] cytochrome c oxidase, cbb3-type, subunit III |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.322856 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.495001 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGACA AGCACAAGCA CGTCGACGAG GTCAGCGGCG TAGAAACCAC CGGGCACGAA
TGGGACGGCA TCCGCGAGCT CAACAATCCT CTGCCGCGCT GGTGGGTCTA CAGCTTCTAT
GCCACGATCA TCTGGGCGAT AGGATATGCC GTCGCTTATC CATCATGGCC AATGCTGACG
GAAGCGACCA AGGGCGTCCT CGGCTATTCC AGCCGCGCCG AAGTAGGCGT CGAACTGGCC
GCTGCCAAGG CTGCACAGGC CGGCAATCTG GAGCAGATCG CATTGAACTC GGTCGAAGAG
ATCATCGCGA ATCCGCAACT GCAGCAATTT GCCGTTTCCG CCGGGGCTTC CGTCTTCAAG
GTGAATTGCG CCCAGTGCCA CGGCTCGGGG GCTGCGGGCG GGCAGGGCTT CCCGAATCTC
AACGACGACG ACTGGCTCTG GGGCGGCAAG CCGCAAGAGA TCTACCAAAC CATAGCTCAT
GGGGTTCGCC ACGCCACCGA CGGGGAAACT CGGGGTTCCG AGATGCCGCC GTTCGGCGAC
ATGCTGACAC CAGAGCAGAT GCAGCAGACG GCCGCCTACG TGATGAGCCT CACCCAGGCA
CCGTCGCAAC CGCACCTCGT CGAGCAGGGT AAGCAGGTGT TCGCCGACAA TTGCGCTTCC
TGCCATGGCG CAGACGCGAA AGGAAACCGC GAGATGGGAG CACCCAACCT CGCCGATGCG
ATCTGGCTGT ACGGCGAGGG GGAGCAGGCG GTGATCGCGC AGATGAAGAC GCCGAAGCAC
GGCGTCATGC CCGCATGGCT GCCGCGCCTC GGCGATCCGG TGGTGAAAGA GCTTGCGGTC
TTCGTTCATT CGCTCGGCGG CGGCGAGTAG
|
|---|
| Protein sequence | MADKHKHVDE VSGVETTGHE WDGIRELNNP LPRWWVYSFY ATIIWAIGYA VAYPSWPMLT
EATKGVLGYS SRAEVGVELA AAKAAQAGNL EQIALNSVEE IIANPQLQQF AVSAGASVFK
VNCAQCHGSG AAGGQGFPNL NDDDWLWGGK PQEIYQTIAH GVRHATDGET RGSEMPPFGD
MLTPEQMQQT AAYVMSLTQA PSQPHLVEQG KQVFADNCAS CHGADAKGNR EMGAPNLADA
IWLYGEGEQA VIAQMKTPKH GVMPAWLPRL GDPVVKELAV FVHSLGGGE
|
|---|
| |