Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_5833 |
Symbol | |
ID | 5320135 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009621 |
Strand | - |
Start bp | 798445 |
End bp | 799176 |
Gene Length | 732 bp |
Protein Length | 243 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640777529 |
Product | ABC transporter related |
Protein accession | YP_001314461 |
Protein GI | 150377866 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1129] ABC-type sugar transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.150147 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.748971 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCACAC CCATCATCGA GTGCCGCAAC CTTCAGAAGT GGTATAGCGG CGTGCATGCG CTGAAGAATG TCGACCTCAC CATTCATCCC GGCGAGACAG TCGGTCTCGT CGGCGACAAC GGCGCCGGCA AGTCGACACT CATCAAGATC CTCTCGGGCG TCCATCATCA GGATTCCGGC GAGGTGCTTA TCGAAGGGCG CAAAGTCGCC CTTCGTAGTC CGAAGGATGC CATGCGACAC GGACTGGAGA CGATCTATCA GTACAATTCC ATGGTCCCTA CAATGTCGAT CGCCCGCAAT CTCTTCATCG GTCGCGAACC GATGAAATGG TCCGTCTTCG GCGTGGGCAT CATGGACCAG CAGCGCATGC GCGCCGAAAG CATCAAGGCC ATCGCCGACG TCGACCTGCA CCTGCGCTCG CCGGATGCGC TGGTCGGAGA ACTTTCGGGC GGGCAGCGGC AGGGTGTGGC AATTGCACGC GCAATGCATT TCAAGTCGAA GGTGCTCATC CTCGATGAGC CGACGAACCA CCTTTCGGTC AAGGAAACGG ACAAGGTGAT CGGTTTCGTC CGTGGCCTGA AGGCTCAGGG CCTGACCGGC ATTTTCATCT CGCACAACAT GCAGCACGTG TTTCAATCCT GTGACCGCAT CGTCGCAATG GCACGCGGCG AGATCGTGTT CGATAAGCCC ACCGCCGAAA CGTCCATCGA CGAGGTTCAC GCGCTTCTGT GA
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Protein sequence | MTTPIIECRN LQKWYSGVHA LKNVDLTIHP GETVGLVGDN GAGKSTLIKI LSGVHHQDSG EVLIEGRKVA LRSPKDAMRH GLETIYQYNS MVPTMSIARN LFIGREPMKW SVFGVGIMDQ QRMRAESIKA IADVDLHLRS PDALVGELSG GQRQGVAIAR AMHFKSKVLI LDEPTNHLSV KETDKVIGFV RGLKAQGLTG IFISHNMQHV FQSCDRIVAM ARGEIVFDKP TAETSIDEVH ALL
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