Gene Smed_5833 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_5833 
Symbol 
ID5320135 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009621 
Strand
Start bp798445 
End bp799176 
Gene Length732 bp 
Protein Length243 aa 
Translation table11 
GC content59% 
IMG OID640777529 
ProductABC transporter related 
Protein accessionYP_001314461 
Protein GI150377866 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1129] ABC-type sugar transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.150147 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.748971 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCACAC CCATCATCGA GTGCCGCAAC CTTCAGAAGT GGTATAGCGG CGTGCATGCG 
CTGAAGAATG TCGACCTCAC CATTCATCCC GGCGAGACAG TCGGTCTCGT CGGCGACAAC
GGCGCCGGCA AGTCGACACT CATCAAGATC CTCTCGGGCG TCCATCATCA GGATTCCGGC
GAGGTGCTTA TCGAAGGGCG CAAAGTCGCC CTTCGTAGTC CGAAGGATGC CATGCGACAC
GGACTGGAGA CGATCTATCA GTACAATTCC ATGGTCCCTA CAATGTCGAT CGCCCGCAAT
CTCTTCATCG GTCGCGAACC GATGAAATGG TCCGTCTTCG GCGTGGGCAT CATGGACCAG
CAGCGCATGC GCGCCGAAAG CATCAAGGCC ATCGCCGACG TCGACCTGCA CCTGCGCTCG
CCGGATGCGC TGGTCGGAGA ACTTTCGGGC GGGCAGCGGC AGGGTGTGGC AATTGCACGC
GCAATGCATT TCAAGTCGAA GGTGCTCATC CTCGATGAGC CGACGAACCA CCTTTCGGTC
AAGGAAACGG ACAAGGTGAT CGGTTTCGTC CGTGGCCTGA AGGCTCAGGG CCTGACCGGC
ATTTTCATCT CGCACAACAT GCAGCACGTG TTTCAATCCT GTGACCGCAT CGTCGCAATG
GCACGCGGCG AGATCGTGTT CGATAAGCCC ACCGCCGAAA CGTCCATCGA CGAGGTTCAC
GCGCTTCTGT GA
 
Protein sequence
MTTPIIECRN LQKWYSGVHA LKNVDLTIHP GETVGLVGDN GAGKSTLIKI LSGVHHQDSG 
EVLIEGRKVA LRSPKDAMRH GLETIYQYNS MVPTMSIARN LFIGREPMKW SVFGVGIMDQ
QRMRAESIKA IADVDLHLRS PDALVGELSG GQRQGVAIAR AMHFKSKVLI LDEPTNHLSV
KETDKVIGFV RGLKAQGLTG IFISHNMQHV FQSCDRIVAM ARGEIVFDKP TAETSIDEVH
ALL